Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LDO90_RS16470 Genome accession   NZ_AP025147
Coordinates   3673970..3675202 (+) Length   410 a.a.
NCBI ID   WP_126606907.1    Uniprot ID   A0AAV5NT12
Organism   Vibrio penaeicida strain IFO 15641     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3668970..3680202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO90_RS16450 ampD 3669623..3670180 (-) 558 WP_126606913.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LDO90_RS16455 nadC 3670664..3671551 (+) 888 WP_126606912.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LDO90_RS16460 - 3671846..3672268 (+) 423 WP_126606910.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LDO90_RS16465 pilB 3672272..3673960 (+) 1689 WP_126606908.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LDO90_RS16470 pilC 3673970..3675202 (+) 1233 WP_126606907.1 type II secretion system F family protein Machinery gene
  LDO90_RS16475 pilD 3675262..3676131 (+) 870 WP_126606905.1 A24 family peptidase Machinery gene
  LDO90_RS16480 coaE 3676183..3676782 (+) 600 WP_126606903.1 dephospho-CoA kinase -
  LDO90_RS16485 zapD 3676820..3677560 (+) 741 WP_126606901.1 cell division protein ZapD -
  LDO90_RS16490 yacG 3677630..3677824 (+) 195 WP_126606900.1 DNA gyrase inhibitor YacG -
  LDO90_RS16495 mutT 3677916..3678329 (-) 414 WP_126606898.1 8-oxo-dGTP diphosphatase MutT -
  LDO90_RS16500 rplS 3678487..3678840 (-) 354 WP_101112478.1 50S ribosomal protein L19 -
  LDO90_RS16505 trmD 3678882..3679625 (-) 744 WP_126606897.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45898.07 Da        Isoelectric Point: 10.3776

>NTDB_id=90002 LDO90_RS16470 WP_126606907.1 3673970..3675202(+) (pilC) [Vibrio penaeicida strain IFO 15641]
MDRSITPRLKLYNFRWKGINSSGKKVSGQFLAYTEVEVRDKLRNQQVQIKKVRKSGISLLDKLSHKVKKKDIMVFTRQMA
TMLGTGVPIVQSLRMVSDNHNKAEMKSILSQVTKSVEAGTPISKALSTSNSLFDSFYTDLIETGEQTGNLSDVFERIATY
QEKSEQLRSKVIKAMIYPVMVLLTAIGVSVLMLKFVIPEFETMFSGFGAELPWFTQQVLKLSHIVQNDLWKMVVAITVLG
IAFKLIRKRSFKFRLRSSRWGLKFPIIGSVFSKAAIAKFSRTLATSFNAGIPILNGLKTSSKTASNLHYQVAIEQVYKDT
AAGMPIYIAMRNTEAFPEMVLQMVMIGEETGSLDDMLNKVANVYEFEVDNTVDNLGKLLEPLIIIFLGVVIGGLVVSMYL
PVFNLMSVLG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=90002 LDO90_RS16470 WP_126606907.1 3673970..3675202(+) (pilC) [Vibrio penaeicida strain IFO 15641]
TTGGATCGTTCAATTACCCCTCGCCTCAAACTGTACAACTTTCGCTGGAAAGGCATTAACAGCTCTGGGAAAAAAGTCTC
TGGGCAATTTCTGGCGTACACCGAGGTTGAAGTACGCGATAAGCTGCGAAACCAACAAGTTCAAATTAAAAAAGTCAGGA
AATCGGGTATCTCGTTGCTCGATAAGCTGAGCCACAAAGTTAAAAAGAAAGACATCATGGTGTTCACTCGCCAAATGGCA
ACCATGCTGGGAACTGGTGTCCCCATCGTTCAATCGTTAAGAATGGTGTCGGATAATCACAACAAAGCAGAGATGAAATC
CATCCTGTCTCAGGTAACCAAATCCGTAGAGGCTGGCACTCCTATCTCTAAAGCACTTAGCACATCCAATAGCCTGTTTG
ACAGCTTTTACACCGACTTGATTGAAACTGGTGAGCAGACTGGTAATTTATCCGATGTTTTTGAGCGTATCGCTACCTAT
CAAGAAAAAAGCGAGCAGCTCCGCTCTAAAGTCATTAAAGCGATGATCTACCCTGTCATGGTTCTTTTGACTGCAATTGG
AGTGTCTGTTCTGATGCTCAAGTTCGTCATACCCGAGTTTGAGACGATGTTTTCGGGGTTTGGCGCTGAATTACCATGGT
TTACTCAACAAGTGCTAAAACTCTCGCACATAGTGCAAAACGACTTGTGGAAGATGGTGGTCGCTATCACCGTACTGGGC
ATTGCTTTTAAACTCATCAGAAAACGATCGTTTAAATTTCGCTTAAGAAGCTCCAGGTGGGGACTGAAATTCCCAATCAT
CGGAAGCGTTTTTAGTAAAGCAGCCATCGCCAAGTTCAGCCGAACACTGGCCACCAGCTTTAATGCTGGTATCCCTATTC
TTAACGGGCTCAAAACCAGCTCTAAGACCGCCAGCAATTTGCATTACCAAGTCGCGATAGAACAGGTTTATAAAGATACA
GCAGCAGGTATGCCTATTTATATCGCCATGAGAAACACGGAAGCTTTTCCAGAAATGGTCTTGCAAATGGTCATGATTGG
AGAAGAAACAGGTTCACTCGACGACATGCTGAATAAAGTCGCGAACGTCTACGAGTTTGAAGTTGATAACACCGTTGATA
ACCTCGGAAAATTACTCGAACCCCTCATTATCATCTTTCTTGGTGTTGTAATTGGTGGGTTAGTCGTCTCTATGTACTTG
CCAGTGTTTAACTTAATGAGTGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

70.936

99.024

0.702
  pilC Vibrio campbellii strain DS40M4

67.317

100

0.673
  pilC Acinetobacter baumannii D1279779

40.955

97.073

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.955

97.073

0.398
  pilC Acinetobacter baylyi ADP1

40.704

97.073

0.395
  pilG Neisseria gonorrhoeae MS11

39.401

97.805

0.385
  pilG Neisseria meningitidis 44/76-A

39.401

97.805

0.385
  pilC Legionella pneumophila strain ERS1305867

37.897

99.756

0.378

Multiple sequence alignment