Detailed information NTG0090003

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LDO90_RS16475
• Genome accession: NZ_AP025147
• Coordinates: 3675262..3676131 (+)
• Length: 289 a.a.
• NCBI ID: WP_126606905.1
• Uniprot ID: -
• Organism: Vibrio penaeicida strain IFO 15641
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3670262..3681131

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO90_RS16455	nadC	3670664..3671551 (+)	888	WP_126606912.1	carboxylating nicotinate-nucleotide diphosphorylase	-
LDO90_RS16460	-	3671846..3672268 (+)	423	WP_126606910.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
LDO90_RS16465	pilB	3672272..3673960 (+)	1689	WP_126606908.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LDO90_RS16470	pilC	3673970..3675202 (+)	1233	WP_126606907.1	type II secretion system F family protein	Machinery gene
LDO90_RS16475	pilD	3675262..3676131 (+)	870	WP_126606905.1	A24 family peptidase	Machinery gene
LDO90_RS16480	coaE	3676183..3676782 (+)	600	WP_126606903.1	dephospho-CoA kinase	-
LDO90_RS16485	zapD	3676820..3677560 (+)	741	WP_126606901.1	cell division protein ZapD	-
LDO90_RS16490	yacG	3677630..3677824 (+)	195	WP_126606900.1	DNA gyrase inhibitor YacG	-
LDO90_RS16495	mutT	3677916..3678329 (-)	414	WP_126606898.1	8-oxo-dGTP diphosphatase MutT	-
LDO90_RS16500	rplS	3678487..3678840 (-)	354	WP_101112478.1	50S ribosomal protein L19	-
LDO90_RS16505	trmD	3678882..3679625 (-)	744	WP_126606897.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
LDO90_RS16510	rimM	3679652..3680206 (-)	555	WP_101112480.1	ribosome maturation factor RimM	-
LDO90_RS16515	rpsP	3680232..3680480 (-)	249	WP_101112481.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32391.40 Da
• Isoelectric Point: 7.5482

>NTDB_id=90003 LDO90_RS16475 WP_126606905.1 3675262..3676131(+) (pilD) [Vibrio penaeicida strain IFO 15641]
MDAFHYYPWLFPLMAAVFGLVIGSFLNVVIYRLPRMMENEWRQECADSFPEYNIAPPTEKLTLSVPRSTCQKCNTQIRIR
DNVPVLSWLLLRGKCRACGTAISARYPLIELLTAGLSFAVANYFGFSYFSIALLFFTFVLIAATFIDFDTLLLPDQLTLP
LMWAGIALSLFEISPVSLTDSVIGAMAGYLCLWSVYYLFKLLTGKEGMGFGDFKLLAALGAWLGWQSLPIIILMSSLVGV
VFGVIQLRLQKKGIEQAFPFGPYLAIAGWVTLLFGKDITSWYFSHFLGI

Nucleotide

• Length: 870 bp

>NTDB_id=90003 LDO90_RS16475 WP_126606905.1 3675262..3676131(+) (pilD) [Vibrio penaeicida strain IFO 15641]
ATGGACGCTTTTCACTACTACCCTTGGCTGTTTCCGTTGATGGCTGCTGTATTTGGGTTGGTCATTGGTAGTTTTTTGAA
TGTCGTGATTTACCGTCTTCCAAGAATGATGGAAAACGAATGGCGACAAGAGTGTGCTGACTCTTTTCCTGAGTACAATA
TTGCGCCTCCAACAGAGAAGCTCACCTTAAGCGTCCCACGTTCTACTTGTCAAAAGTGCAATACACAAATCAGAATTCGG
GATAATGTCCCAGTGCTCAGCTGGTTACTTCTACGCGGTAAATGTCGCGCTTGCGGCACTGCGATCTCAGCTCGTTACCC
TCTTATCGAACTGCTTACCGCAGGTCTCAGCTTTGCTGTTGCAAACTATTTCGGGTTCAGTTATTTCTCTATTGCCCTTC
TATTTTTTACTTTTGTGCTTATCGCAGCCACTTTCATTGATTTCGACACTTTACTTCTCCCCGACCAACTCACCTTACCG
CTTATGTGGGCAGGGATAGCGCTTTCGCTCTTTGAAATCAGCCCTGTATCACTCACTGATTCCGTGATCGGTGCAATGGC
GGGTTACTTGTGTTTATGGAGTGTTTATTACCTGTTTAAGCTGCTTACTGGCAAAGAAGGGATGGGGTTTGGCGATTTCA
AATTACTTGCGGCACTCGGAGCTTGGTTGGGTTGGCAAAGTTTGCCCATTATAATCCTGATGTCATCACTAGTGGGTGTT
GTGTTTGGCGTGATTCAGCTAAGATTGCAGAAAAAAGGCATCGAACAAGCCTTCCCTTTTGGTCCTTACCTTGCCATCGC
TGGTTGGGTTACCCTATTGTTTGGAAAAGACATCACAAGTTGGTATTTTTCACATTTCCTTGGCATTTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.471	100	0.765
pilD	Vibrio cholerae strain A1552	71.181	99.654	0.709
pilD	Acinetobacter nosocomialis M2	53.333	93.426	0.498
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Neisseria gonorrhoeae MS11	46.263	97.232	0.45