Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LDO37_RS15880 Genome accession   NZ_AP025144
Coordinates   3542259..3543491 (+) Length   410 a.a.
NCBI ID   WP_126606907.1    Uniprot ID   A0AAV5NT12
Organism   Vibrio penaeicida strain IFO 15640T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3537259..3548491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO37_RS15860 ampD 3537912..3538469 (-) 558 WP_126606913.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  LDO37_RS15865 nadC 3538953..3539840 (+) 888 WP_126606912.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LDO37_RS15870 - 3540135..3540557 (+) 423 WP_126606910.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LDO37_RS15875 pilB 3540561..3542249 (+) 1689 WP_126606908.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LDO37_RS15880 pilC 3542259..3543491 (+) 1233 WP_126606907.1 type II secretion system F family protein Machinery gene
  LDO37_RS15885 pilD 3543551..3544420 (+) 870 WP_126606905.1 A24 family peptidase Machinery gene
  LDO37_RS15890 coaE 3544472..3545071 (+) 600 WP_126606903.1 dephospho-CoA kinase -
  LDO37_RS15895 zapD 3545109..3545849 (+) 741 WP_126606901.1 cell division protein ZapD -
  LDO37_RS15900 yacG 3545919..3546113 (+) 195 WP_126606900.1 DNA gyrase inhibitor YacG -
  LDO37_RS15905 mutT 3546205..3546618 (-) 414 WP_126606898.1 8-oxo-dGTP diphosphatase MutT -
  LDO37_RS15910 rplS 3546776..3547129 (-) 354 WP_101112478.1 50S ribosomal protein L19 -
  LDO37_RS15915 trmD 3547171..3547914 (-) 744 WP_126606897.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45898.07 Da        Isoelectric Point: 10.3776

>NTDB_id=89957 LDO37_RS15880 WP_126606907.1 3542259..3543491(+) (pilC) [Vibrio penaeicida strain IFO 15640T]
MDRSITPRLKLYNFRWKGINSSGKKVSGQFLAYTEVEVRDKLRNQQVQIKKVRKSGISLLDKLSHKVKKKDIMVFTRQMA
TMLGTGVPIVQSLRMVSDNHNKAEMKSILSQVTKSVEAGTPISKALSTSNSLFDSFYTDLIETGEQTGNLSDVFERIATY
QEKSEQLRSKVIKAMIYPVMVLLTAIGVSVLMLKFVIPEFETMFSGFGAELPWFTQQVLKLSHIVQNDLWKMVVAITVLG
IAFKLIRKRSFKFRLRSSRWGLKFPIIGSVFSKAAIAKFSRTLATSFNAGIPILNGLKTSSKTASNLHYQVAIEQVYKDT
AAGMPIYIAMRNTEAFPEMVLQMVMIGEETGSLDDMLNKVANVYEFEVDNTVDNLGKLLEPLIIIFLGVVIGGLVVSMYL
PVFNLMSVLG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=89957 LDO37_RS15880 WP_126606907.1 3542259..3543491(+) (pilC) [Vibrio penaeicida strain IFO 15640T]
TTGGATCGTTCAATTACCCCTCGCCTCAAACTGTACAACTTTCGCTGGAAAGGCATTAACAGCTCTGGGAAAAAAGTCTC
TGGGCAATTTCTGGCGTACACCGAGGTTGAAGTACGCGATAAGCTGCGAAACCAACAAGTTCAAATTAAAAAAGTCAGGA
AATCGGGTATCTCGTTGCTCGATAAGCTGAGCCACAAAGTTAAAAAGAAAGACATCATGGTGTTCACTCGCCAAATGGCA
ACCATGCTGGGAACTGGTGTCCCCATCGTTCAATCGTTAAGAATGGTGTCGGATAATCACAACAAAGCAGAGATGAAATC
CATCCTGTCTCAGGTAACCAAATCCGTAGAGGCTGGCACTCCTATCTCTAAAGCACTTAGCACATCCAATAGCCTGTTTG
ACAGCTTTTACACCGACTTGATTGAAACTGGTGAGCAGACTGGTAATTTATCCGATGTTTTTGAGCGTATCGCTACCTAT
CAAGAAAAAAGCGAGCAGCTCCGCTCTAAAGTCATTAAAGCGATGATCTACCCTGTCATGGTTCTTTTGACTGCAATTGG
AGTGTCTGTTCTGATGCTCAAGTTCGTCATACCCGAGTTTGAGACGATGTTTTCGGGGTTTGGCGCTGAATTACCATGGT
TTACTCAACAAGTGCTAAAACTCTCGCACATAGTGCAAAACGACTTGTGGAAGATGGTGGTCGCTATCACCGTACTGGGC
ATTGCTTTTAAACTCATCAGAAAACGATCGTTTAAATTTCGCTTAAGAAGCTCCAGGTGGGGACTGAAATTCCCAATCAT
CGGAAGCGTTTTTAGTAAAGCAGCCATCGCCAAGTTCAGCCGAACACTGGCCACCAGCTTTAATGCTGGTATCCCTATTC
TTAACGGGCTCAAAACCAGCTCTAAGACCGCCAGCAATTTGCATTACCAAGTCGCGATAGAACAGGTTTATAAAGATACA
GCAGCAGGTATGCCTATTTATATCGCCATGAGAAACACGGAAGCTTTTCCAGAAATGGTCTTGCAAATGGTCATGATTGG
AGAAGAAACAGGTTCACTCGACGACATGCTGAATAAAGTCGCGAACGTCTACGAGTTTGAAGTTGATAACACCGTTGATA
ACCTCGGAAAATTACTCGAACCCCTCATTATCATCTTTCTTGGTGTTGTAATTGGTGGGTTAGTCGTCTCTATGTACTTG
CCAGTGTTTAACTTAATGAGTGTATTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

70.936

99.024

0.702
  pilC Vibrio campbellii strain DS40M4

67.317

100

0.673
  pilC Acinetobacter baumannii D1279779

40.955

97.073

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.955

97.073

0.398
  pilC Acinetobacter baylyi ADP1

40.704

97.073

0.395
  pilG Neisseria gonorrhoeae MS11

39.401

97.805

0.385
  pilG Neisseria meningitidis 44/76-A

39.401

97.805

0.385
  pilC Legionella pneumophila strain ERS1305867

37.897

99.756

0.378

Multiple sequence alignment