Detailed information NTG0089958

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LDO37_RS15885
• Genome accession: NZ_AP025144
• Coordinates: 3543551..3544420 (+)
• Length: 289 a.a.
• NCBI ID: WP_126606905.1
• Uniprot ID: -
• Organism: Vibrio penaeicida strain IFO 15640T
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3538551..3549420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LDO37_RS15865	nadC	3538953..3539840 (+)	888	WP_126606912.1	carboxylating nicotinate-nucleotide diphosphorylase	-
LDO37_RS15870	-	3540135..3540557 (+)	423	WP_126606910.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
LDO37_RS15875	pilB	3540561..3542249 (+)	1689	WP_126606908.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LDO37_RS15880	pilC	3542259..3543491 (+)	1233	WP_126606907.1	type II secretion system F family protein	Machinery gene
LDO37_RS15885	pilD	3543551..3544420 (+)	870	WP_126606905.1	A24 family peptidase	Machinery gene
LDO37_RS15890	coaE	3544472..3545071 (+)	600	WP_126606903.1	dephospho-CoA kinase	-
LDO37_RS15895	zapD	3545109..3545849 (+)	741	WP_126606901.1	cell division protein ZapD	-
LDO37_RS15900	yacG	3545919..3546113 (+)	195	WP_126606900.1	DNA gyrase inhibitor YacG	-
LDO37_RS15905	mutT	3546205..3546618 (-)	414	WP_126606898.1	8-oxo-dGTP diphosphatase MutT	-
LDO37_RS15910	rplS	3546776..3547129 (-)	354	WP_101112478.1	50S ribosomal protein L19	-
LDO37_RS15915	trmD	3547171..3547914 (-)	744	WP_126606897.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
LDO37_RS15920	rimM	3547941..3548495 (-)	555	WP_101112480.1	ribosome maturation factor RimM	-
LDO37_RS15925	rpsP	3548521..3548769 (-)	249	WP_101112481.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32391.40 Da
• Isoelectric Point: 7.5482

>NTDB_id=89958 LDO37_RS15885 WP_126606905.1 3543551..3544420(+) (pilD) [Vibrio penaeicida strain IFO 15640T]
MDAFHYYPWLFPLMAAVFGLVIGSFLNVVIYRLPRMMENEWRQECADSFPEYNIAPPTEKLTLSVPRSTCQKCNTQIRIR
DNVPVLSWLLLRGKCRACGTAISARYPLIELLTAGLSFAVANYFGFSYFSIALLFFTFVLIAATFIDFDTLLLPDQLTLP
LMWAGIALSLFEISPVSLTDSVIGAMAGYLCLWSVYYLFKLLTGKEGMGFGDFKLLAALGAWLGWQSLPIIILMSSLVGV
VFGVIQLRLQKKGIEQAFPFGPYLAIAGWVTLLFGKDITSWYFSHFLGI

Nucleotide

• Length: 870 bp

>NTDB_id=89958 LDO37_RS15885 WP_126606905.1 3543551..3544420(+) (pilD) [Vibrio penaeicida strain IFO 15640T]
ATGGACGCTTTTCACTACTACCCTTGGCTGTTTCCGTTGATGGCTGCTGTATTTGGGTTGGTCATTGGTAGTTTTTTGAA
TGTCGTGATTTACCGTCTTCCAAGAATGATGGAAAACGAATGGCGACAAGAGTGTGCTGACTCTTTTCCTGAGTACAATA
TTGCGCCTCCAACAGAGAAGCTCACCTTAAGCGTCCCACGTTCTACTTGTCAAAAGTGCAATACACAAATCAGAATTCGG
GATAATGTCCCAGTGCTCAGCTGGTTACTTCTACGCGGTAAATGTCGCGCTTGCGGCACTGCGATCTCAGCTCGTTACCC
TCTTATCGAACTGCTTACCGCAGGTCTCAGCTTTGCTGTTGCAAACTATTTCGGGTTCAGTTATTTCTCTATTGCCCTTC
TATTTTTTACTTTTGTGCTTATCGCAGCCACTTTCATTGATTTCGACACTTTACTTCTCCCCGACCAACTCACCTTACCG
CTTATGTGGGCAGGGATAGCGCTTTCGCTCTTTGAAATCAGCCCTGTATCACTCACTGATTCCGTGATCGGTGCAATGGC
GGGTTACTTGTGTTTATGGAGTGTTTATTACCTGTTTAAGCTGCTTACTGGCAAAGAAGGGATGGGGTTTGGCGATTTCA
AATTACTTGCGGCACTCGGAGCTTGGTTGGGTTGGCAAAGTTTGCCCATTATAATCCTGATGTCATCACTAGTGGGTGTT
GTGTTTGGCGTGATTCAGCTAAGATTGCAGAAAAAAGGCATCGAACAAGCCTTCCCTTTTGGTCCTTACCTTGCCATCGC
TGGTTGGGTTACCCTATTGTTTGGAAAAGACATCACAAGTTGGTATTTTTCACATTTCCTTGGCATTTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.471	100	0.765
pilD	Vibrio cholerae strain A1552	71.181	99.654	0.709
pilD	Acinetobacter nosocomialis M2	53.333	93.426	0.498
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Neisseria gonorrhoeae MS11	46.263	97.232	0.45