Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   R4B61_RS04840 Genome accession   NZ_CP137138
Coordinates   987666..988910 (+) Length   414 a.a.
NCBI ID   WP_413627153.1    Uniprot ID   -
Organism   Fructilactobacillus vespulae strain Mu01     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 982666..993910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4B61_RS04820 (R4B61_04795) yfmF 983511..984773 (+) 1263 WP_413627149.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  R4B61_RS04825 (R4B61_04800) yfmH 984766..986052 (+) 1287 WP_413627150.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  R4B61_RS04830 (R4B61_04805) - 986124..986993 (+) 870 WP_413627151.1 helix-turn-helix domain-containing protein -
  R4B61_RS04835 (R4B61_04810) pgsA 987063..987650 (+) 588 WP_413627152.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R4B61_RS04840 (R4B61_04815) cinA 987666..988910 (+) 1245 WP_413627153.1 competence/damage-inducible protein A Machinery gene
  R4B61_RS04845 (R4B61_04820) rny 989033..990592 (+) 1560 WP_413628297.1 ribonuclease Y -
  R4B61_RS04850 (R4B61_04825) - 990742..991548 (+) 807 WP_413627154.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45051.36 Da        Isoelectric Point: 4.7525

>NTDB_id=896473 R4B61_RS04840 WP_413627153.1 987666..988910(+) (cinA) [Fructilactobacillus vespulae strain Mu01]
MKAEIITVGTEILLGEIIDTSGPFVGKQLANLGIDVYYKDTVGDNFKRLDDAISLAEKRGDLIILTGGLGPTEDDITKQV
LAKHLGLELVDDQVALTKINDFYAKSRTNRPGNELIMAQYVSGATVLPNDNGFAVGMFLKFNSKSYLVLPGPPSEMQPMF
NKYGLPLLGKEIGQQSLIESRVLHFIGIGETNLEDQLKELISKQTNPTLATYVKQNEVTLRITANGKDQEEIKRLLDQEE
RQVQKIVGKYFYGYGEENSIEQVVVNLLKQNKLTITAAESLTSGMFQSKIGSVSGASEVFSGGFVTYAASTKEKLVAVAK
ETIQNSGVVSAATAAEMAAGALKALETDLAVSFTGVAGPSSLEGHPAGYFWIGMALPDGNVITQDFNFPKSRNDVRDYAV
KMGFKMIYDYLENN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=896473 R4B61_RS04840 WP_413627153.1 987666..988910(+) (cinA) [Fructilactobacillus vespulae strain Mu01]
ATGAAAGCTGAAATAATCACAGTTGGAACGGAAATTTTATTGGGAGAAATAATTGATACCAGTGGTCCGTTTGTGGGTAA
GCAACTGGCTAATTTAGGTATTGATGTATACTACAAAGATACTGTTGGAGATAACTTTAAAAGACTTGATGATGCAATCA
GTTTGGCAGAAAAGCGCGGTGATCTCATCATTTTAACCGGTGGCTTGGGGCCAACTGAAGATGATATTACTAAGCAAGTA
TTAGCCAAACATTTAGGATTAGAACTGGTTGATGATCAAGTAGCTCTAACTAAAATTAATGATTTTTACGCTAAATCACG
AACCAATCGTCCTGGTAACGAATTAATAATGGCTCAGTATGTTTCTGGTGCGACCGTTCTCCCCAATGACAATGGTTTTG
CCGTCGGGATGTTTTTGAAGTTTAACTCAAAAAGCTATTTGGTTCTTCCTGGACCCCCAAGTGAGATGCAACCAATGTTT
AATAAATATGGCTTGCCTTTGTTGGGAAAAGAAATTGGTCAGCAAAGTTTAATTGAGTCAAGAGTTTTACATTTTATTGG
AATTGGTGAAACCAACTTAGAAGATCAATTAAAAGAATTGATTTCTAAGCAAACTAATCCAACCTTAGCGACTTACGTAA
AGCAAAACGAAGTCACTTTAAGAATAACTGCCAATGGTAAAGACCAAGAAGAAATTAAAAGACTATTAGATCAAGAAGAA
CGACAGGTTCAAAAGATAGTGGGAAAATACTTTTATGGTTATGGTGAAGAAAATTCAATTGAACAAGTAGTAGTTAACTT
ATTAAAGCAAAATAAACTAACGATTACAGCCGCTGAGTCTTTAACTAGTGGAATGTTCCAAAGTAAAATAGGGAGCGTCT
CAGGAGCTTCTGAGGTCTTTTCAGGGGGATTTGTGACTTATGCCGCCAGCACTAAAGAAAAATTAGTTGCTGTTGCTAAA
GAAACGATTCAAAATAGTGGAGTTGTGTCGGCAGCTACTGCAGCGGAAATGGCTGCAGGAGCTTTAAAAGCCCTCGAAAC
TGATCTGGCAGTTTCTTTCACCGGTGTTGCTGGTCCTAGTAGTTTGGAAGGTCATCCTGCTGGTTATTTCTGGATTGGAA
TGGCACTTCCAGACGGAAATGTCATTACCCAGGATTTTAATTTCCCTAAATCTAGAAATGATGTCAGAGACTATGCAGTA
AAAATGGGATTTAAAATGATCTATGATTATTTAGAGAATAACTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(4-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

47.63

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.156

100

0.481
  cinA Streptococcus mutans UA159

46.86

100

0.469
  cinA Streptococcus pneumoniae TIGR4

45.476

100

0.461
  cinA Streptococcus pneumoniae Rx1

45.476

100

0.461
  cinA Streptococcus pneumoniae R6

45.476

100

0.461
  cinA Streptococcus pneumoniae D39

45.238

100

0.459
  cinA Bacillus subtilis subsp. subtilis str. 168

42.579

99.275

0.423
  cinA Streptococcus suis isolate S10

40.992

92.512

0.379