Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   R3L13_RS12240 Genome accession   NZ_CP137055
Coordinates   2546113..2547339 (-) Length   408 a.a.
NCBI ID   WP_032068241.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SNUBHAB0137     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2541113..2552339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3L13_RS12210 (R3L13_12235) - 2541144..2542454 (+) 1311 WP_000753283.1 tetratricopeptide repeat protein -
  R3L13_RS12215 (R3L13_12240) - 2542531..2542857 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  R3L13_RS12220 (R3L13_12245) rlmB 2542959..2543708 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  R3L13_RS12225 (R3L13_12250) - 2543744..2544658 (+) 915 WP_000075020.1 DMT family transporter -
  R3L13_RS12230 (R3L13_12255) coaE 2544655..2545251 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  R3L13_RS12235 (R3L13_12260) pilD 2545253..2546113 (-) 861 WP_001152283.1 A24 family peptidase Machinery gene
  R3L13_RS12240 (R3L13_12265) pilC 2546113..2547339 (-) 1227 WP_032068241.1 type II secretion system F family protein Machinery gene
  R3L13_RS12245 (R3L13_12270) pilB 2547369..2549081 (-) 1713 WP_001274992.1 type IV-A pilus assembly ATPase PilB Machinery gene
  R3L13_RS12250 (R3L13_12275) tpiA 2549372..2550166 (+) 795 WP_000016932.1 triose-phosphate isomerase -
  R3L13_RS12255 (R3L13_12280) secG 2550179..2550508 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -
  R3L13_RS12275 (R3L13_12300) rimP 2551150..2551674 (+) 525 WP_000777730.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44922.40 Da        Isoelectric Point: 9.9566

>NTDB_id=894436 R3L13_RS12240 WP_032068241.1 2546113..2547339(-) (pilC) [Acinetobacter baumannii strain SNUBHAB0137]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=894436 R3L13_RS12240 WP_032068241.1 2546113..2547339(-) (pilC) [Acinetobacter baumannii strain SNUBHAB0137]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGGTTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCAGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.51

100

0.995
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

54.074

99.265

0.537
  pilG Neisseria meningitidis 44/76-A

47.487

97.549

0.463
  pilG Neisseria gonorrhoeae MS11

47.487

97.549

0.463
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.842

99.02

0.404