Detailed information NTG0894435

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: R3L13_RS12235
• Genome accession: NZ_CP137055
• Coordinates: 2545253..2546113 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152283.1
• Uniprot ID: A0A009QK25
• Organism: Acinetobacter baumannii strain SNUBHAB0137
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2540253..2551113

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3L13_RS12210 (R3L13_12235)	-	2541144..2542454 (+)	1311	WP_000753283.1	tetratricopeptide repeat protein	-
R3L13_RS12215 (R3L13_12240)	-	2542531..2542857 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
R3L13_RS12220 (R3L13_12245)	rlmB	2542959..2543708 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
R3L13_RS12225 (R3L13_12250)	-	2543744..2544658 (+)	915	WP_000075020.1	DMT family transporter	-
R3L13_RS12230 (R3L13_12255)	coaE	2544655..2545251 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
R3L13_RS12235 (R3L13_12260)	pilD	2545253..2546113 (-)	861	WP_001152283.1	A24 family peptidase	Machinery gene
R3L13_RS12240 (R3L13_12265)	pilC	2546113..2547339 (-)	1227	WP_032068241.1	type II secretion system F family protein	Machinery gene
R3L13_RS12245 (R3L13_12270)	pilB	2547369..2549081 (-)	1713	WP_001274992.1	type IV-A pilus assembly ATPase PilB	Machinery gene
R3L13_RS12250 (R3L13_12275)	tpiA	2549372..2550166 (+)	795	WP_000016932.1	triose-phosphate isomerase	-
R3L13_RS12255 (R3L13_12280)	secG	2550179..2550508 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32144.59 Da
• Isoelectric Point: 7.1041

>NTDB_id=894435 R3L13_RS12235 WP_001152283.1 2545253..2546113(-) (pilD) [Acinetobacter baumannii strain SNUBHAB0137]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=894435 R3L13_RS12235 WP_001152283.1 2545253..2546113(-) (pilD) [Acinetobacter baumannii strain SNUBHAB0137]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A009QK25

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441