Detailed information NTG0893883

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: R3J26_RS11395
• Genome accession: NZ_CP136970
• Coordinates: 2411040..2412242 (-)
• Length: 400 a.a.
• NCBI ID: WP_010894959.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain XF3348
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2406040..2417242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R3J26_RS11375 (R3J26_11345)	-	2407261..2407938 (+)	678	WP_010894955.1	response regulator transcription factor	-
R3J26_RS11380 (R3J26_11350)	-	2407931..2409268 (+)	1338	WP_027700147.1	HAMP domain-containing sensor histidine kinase	-
R3J26_RS11385 (R3J26_11355)	coaE	2409535..2410158 (-)	624	WP_004084593.1	dephospho-CoA kinase	-
R3J26_RS11390 (R3J26_11360)	-	2410170..2411033 (-)	864	WP_004084594.1	A24 family peptidase	-
R3J26_RS11395 (R3J26_11365)	pilC	2411040..2412242 (-)	1203	WP_010894959.1	type II secretion system F family protein	Machinery gene
R3J26_RS11400 (R3J26_11370)	-	2412683..2413129 (+)	447	WP_154128445.1	pilin	-
R3J26_RS11405 (R3J26_11375)	-	2414437..2414871 (+)	435	WP_004084597.1	pilin	-

Sequence

Protein

• Length: 400 a.a.
• Molecular weight: 44112.05 Da
• Isoelectric Point: 10.1299

>NTDB_id=893883 R3J26_RS11395 WP_010894959.1 2411040..2412242(-) (pilC) [Xylella fastidiosa subsp. multiplex strain XF3348]
MTSFLWEGTDKRGVKIKGEQTARTANLLRAELRRQGITPLVVKPRPKPLFGQAGKRITPKDIAFFSRQMATMMKAGVPIV
GALDILANGQKNPRMRTMVNQIKNDIEGGSSLYESISKHPVYFDELYRNLVRAGERAGVLETVLDTIASYKENIEALKGK
IRKALFYPVAIVAVALIVSSILLIYVVPQFEDVFKGFGAELPAFTQMIVNFSNFMQRWWWAMLALLIVVIGGGLFTYKRS
ESMQHLLDRLVLKFPVIGAIMHNSALARFSRTTAVTFRAGVPLVEALGIVAGATGNKVYSDAVFRMRDDVSVGYSINMSM
RQVGIFPHMVVQMASIGEEAGALDAMLFKVAEYYEQEVSNAVDGLSSLLEPLIMVFIGVIVGGMVIAMYLPIFKLASVVG

Nucleotide

• Length: 1203 bp

>NTDB_id=893883 R3J26_RS11395 WP_010894959.1 2411040..2412242(-) (pilC) [Xylella fastidiosa subsp. multiplex strain XF3348]
TTGACTTCGTTTCTTTGGGAAGGGACGGATAAGCGCGGTGTCAAAATTAAGGGGGAACAGACAGCACGCACGGCGAACTT
GTTGCGTGCTGAGCTACGTCGTCAAGGCATCACGCCTCTTGTGGTTAAGCCTAGGCCTAAGCCGCTGTTTGGTCAGGCAG
GGAAGCGGATCACTCCGAAGGACATTGCCTTTTTTAGTCGCCAGATGGCGACGATGATGAAAGCCGGTGTCCCCATTGTC
GGGGCGTTGGATATTTTGGCCAACGGTCAGAAGAATCCGCGTATGCGTACGATGGTCAATCAAATTAAAAATGATATTGA
AGGCGGTTCCTCGCTGTATGAGTCAATCAGCAAGCACCCTGTATATTTCGATGAGCTTTATCGCAATCTGGTCAGGGCTG
GCGAGCGCGCGGGCGTGCTGGAGACGGTGCTTGATACGATTGCTAGTTATAAGGAGAACATTGAGGCTCTGAAGGGAAAA
ATTCGCAAGGCGTTGTTTTATCCTGTTGCTATTGTCGCGGTTGCTCTCATTGTTAGTTCGATTTTATTGATATACGTGGT
GCCGCAGTTCGAGGATGTGTTCAAAGGATTCGGAGCGGAATTGCCTGCATTCACTCAGATGATTGTCAATTTTTCCAACT
TCATGCAGCGGTGGTGGTGGGCCATGTTGGCTCTGCTGATTGTTGTTATCGGTGGTGGTTTGTTTACTTACAAGCGCTCT
GAATCCATGCAACATCTGCTGGATAGGTTGGTGTTGAAGTTCCCAGTGATCGGGGCAATTATGCACAATAGCGCGCTTGC
TCGGTTCTCGCGAACAACAGCTGTTACTTTCCGTGCAGGGGTGCCACTGGTAGAGGCATTGGGTATCGTTGCTGGGGCAA
CCGGCAATAAGGTTTATTCGGATGCTGTGTTCCGCATGCGTGATGATGTCTCAGTTGGCTATTCTATAAATATGTCAATG
AGGCAAGTTGGTATCTTCCCTCATATGGTGGTGCAGATGGCTTCCATCGGTGAGGAAGCCGGTGCTCTGGACGCGATGCT
GTTTAAAGTCGCTGAGTACTATGAACAGGAAGTCAGTAACGCGGTCGATGGACTCAGCAGTTTGCTGGAACCGCTGATCA
TGGTCTTTATTGGTGTTATCGTCGGCGGCATGGTCATTGCTATGTATTTGCCGATCTTTAAGCTTGCTTCTGTCGTTGGA
TAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (269-391)

• Type II secretion system (T2SS), protein F (T2SSF) (65-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.5	100	0.545
pilC	Legionella pneumophila strain ERS1305867	52.099	100	0.528
pilC	Acinetobacter baylyi ADP1	51	100	0.51
pilC	Acinetobacter baumannii D1279779	50.5	100	0.505
pilG	Neisseria gonorrhoeae MS11	43.467	99.5	0.432
pilG	Neisseria meningitidis 44/76-A	42.965	99.5	0.428
pilC	Vibrio cholerae strain A1552	40.943	100	0.413
pilC	Vibrio campbellii strain DS40M4	40.399	100	0.405
pilC	Thermus thermophilus HB27	37.352	100	0.395