NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	AAG092_RS03165	Genome accession	NZ_CP154874
Coordinates	665801..666436 (-)	Length	211 a.a.
NCBI ID	WP_110682468.1	Uniprot ID	-
Organism	Pseudomonas alcaligenes strain Med1
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 660801..671436

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG092_RS03150 (AAG092_03130)	hupB	661458..661730 (-)	273	WP_003087931.1	nucleoid-associated protein HU-beta	-
AAG092_RS03155 (AAG092_03135)	lon	661867..664263 (-)	2397	WP_373388512.1	endopeptidase La	-
AAG092_RS03160 (AAG092_03140)	clpX	664411..665691 (-)	1281	WP_373388513.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AAG092_RS03165 (AAG092_03145)	clpP	665801..666436 (-)	636	WP_110682468.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
AAG092_RS03170 (AAG092_03150)	tig	666528..667838 (-)	1311	WP_373388514.1	trigger factor	-
AAG092_RS03190 (AAG092_03170)	folD	668566..669420 (+)	855	WP_110682470.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-
AAG092_RS03195 (AAG092_03175)	-	669479..671218 (-)	1740	WP_373388515.1	extracellular solute-binding protein	-

Sequence

Protein

Download Length: 211 a.a. Molecular weight: 23262.92 Da Isoelectric Point: 5.9279

                                >NTDB_id=893848 AAG092_RS03165 WP_110682468.1 665801..666436(-) (clpP) [Pseudomonas alcaligenes strain Med1]

MSHNSFINTMPDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQLLFLEAENPDKDIHLYI

NSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAREIL

TIRERLNKILADHCKQPIDVIAKDTDRDNFMSGEEAVKYGLIDKVLDKRPV

Nucleotide

Download Length: 636 bp

                                >NTDB_id=893848 AAG092_RS03165 WP_110682468.1 665801..666436(-) (clpP) [Pseudomonas alcaligenes strain Med1]

ATGTCGCATAACTCTTTCATCAACACCATGCCTGATATCCAAGCCGCCGGCGGCCTCGTGCCGATGGTGATCGAGCAGTC

CGCCCGTGGCGAGCGTGCCTACGACATCTATTCGCGCCTGTTGAAGGAGCGGGTGATCTTCCTGGTCGGCCCGGTCGAGG

ACTACATGGCCAACCTGGTGGTGGCCCAGCTGCTGTTCCTCGAGGCCGAGAACCCGGACAAGGACATCCACCTGTACATC

AACTCGCCGGGTGGCTCGGTGACTGCCGGCATGTCGATCTACGACACCATGCAGTTCATCAAGCCCGACGTGTCCACCAT

CTGCATCGGCCAGGCCTGCAGCATGGGCGCGCTGCTGCTGGCTGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCACT

CGCGCATGATGATCCACCAGCCGCTGGGCGGCTTCCAGGGCCAGGCCTCGGACATCGAGATCCATGCCCGCGAGATCCTC

ACCATCCGCGAGCGCCTGAACAAGATCCTCGCCGATCACTGCAAGCAGCCGATCGACGTGATCGCTAAGGACACCGACCG

CGACAACTTCATGAGCGGCGAAGAGGCGGTCAAGTACGGCCTCATCGACAAGGTTCTGGACAAGCGTCCCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	68.617	89.1	0.611
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.368	90.047	0.607
clpP	Lactococcus lactis subsp. cremoris KW2	54.315	93.365	0.507
clpP	Streptococcus mutans UA159	54.167	90.995	0.493
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.792	93.365	0.493
clpP	Streptococcus pyogenes JRS4	54.45	90.521	0.493
clpP	Streptococcus pyogenes MGAS315	54.45	90.521	0.493
clpP	Streptococcus pneumoniae D39	53.684	90.047	0.483
clpP	Streptococcus pneumoniae TIGR4	53.684	90.047	0.483
clpP	Streptococcus pneumoniae R6	53.684	90.047	0.483
clpP	Streptococcus pneumoniae Rx1	53.684	90.047	0.483
clpP	Streptococcus thermophilus LMD-9	53.158	90.047	0.479
clpP	Streptococcus thermophilus LMG 18311	53.158	90.047	0.479

Detailed information NTG0893848