Detailed information NTG0893847

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AAG092_RS03160
• Genome accession: NZ_CP154874
• Coordinates: 664411..665691 (-)
• Length: 426 a.a.
• NCBI ID: WP_373388513.1
• Uniprot ID: -
• Organism: Pseudomonas alcaligenes strain Med1
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 659411..670691

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG092_RS03145 (AAG092_03125)	-	659429..661282 (-)	1854	WP_373388511.1	SurA N-terminal domain-containing protein	-
AAG092_RS03150 (AAG092_03130)	hupB	661458..661730 (-)	273	WP_003087931.1	nucleoid-associated protein HU-beta	-
AAG092_RS03155 (AAG092_03135)	lon	661867..664263 (-)	2397	WP_373388512.1	endopeptidase La	-
AAG092_RS03160 (AAG092_03140)	clpX	664411..665691 (-)	1281	WP_373388513.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AAG092_RS03165 (AAG092_03145)	clpP	665801..666436 (-)	636	WP_110682468.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
AAG092_RS03170 (AAG092_03150)	tig	666528..667838 (-)	1311	WP_373388514.1	trigger factor	-
AAG092_RS03190 (AAG092_03170)	folD	668566..669420 (+)	855	WP_110682470.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46594.29 Da
• Isoelectric Point: 4.7764

>NTDB_id=893847 AAG092_RS03160 WP_373388513.1 664411..665691(-) (clpX) [Pseudomonas alcaligenes strain Med1]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSAHKLPAPKEISGILDQYVI
GQERAKKVLSVAVYNHYKRLNQRDKKDDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVE
NIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD
TRNILFICGGAFAGLEKVIQARSTKGGIGFNAEVRSPDLGKKVGEALREVEPDDLVKFGLIPEFVGRLPVIATLDELDEA
ALMQILTEPKNALTKQYAKLFEMEGVDLEFRADALKAVAKRALERKTGARGLRSILEGVLLDTMYEIPSQSDVSKVVIDE
SVIEGSSKPLLIYENSEPPAKAAPDA

Nucleotide

• Length: 1281 bp

>NTDB_id=893847 AAG092_RS03160 WP_373388513.1 664411..665691(-) (clpX) [Pseudomonas alcaligenes strain Med1]
ATGACTGACACCCGCAACGGCGAGGACAACGGCAAGCTGCTCTACTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCG
CAAGCTGATCGCCGGTCCCTCGGTCTTTATCTGCGACGAGTGCGTCGACCTGTGCAACGACATCATCCGCGAGGAGGTGC
AGGAAGCCCAGGCCGAAAGCAGCGCCCACAAGTTGCCTGCGCCCAAGGAAATCAGCGGCATTCTGGATCAGTACGTGATC
GGTCAGGAGCGCGCCAAGAAGGTGCTCTCCGTTGCCGTGTACAACCACTACAAGCGTCTGAACCAGCGCGACAAGAAGGA
TGACGTCGAGCTGGGCAAGAGCAACATCCTGCTGATCGGCCCGACCGGCTCCGGCAAGACCCTGCTGGCCGAGACCCTGG
CCCGCCTGCTCAACGTGCCGTTCACCATCGCCGACGCCACTACCCTGACCGAAGCCGGTTACGTGGGTGAGGACGTCGAG
AACATCATCCAGAAGCTGCTGCAGAAGTGCGACTACGATGTCGAGAAGGCCCAGATGGGTATCGTCTACATCGACGAGAT
CGACAAGATCTCGCGCAAGTCGGATAACCCGTCCATCACCCGCGACGTCTCGGGCGAGGGCGTGCAGCAGGCGCTGCTGA
AGCTGATCGAGGGCACCGTCGCCTCGGTGCCGCCACAGGGTGGTCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTCGAT
ACGCGCAACATCCTGTTCATCTGCGGTGGCGCCTTCGCCGGTCTGGAGAAGGTCATCCAGGCCCGCTCCACCAAGGGCGG
CATCGGCTTCAACGCCGAAGTGCGCAGCCCGGACCTGGGCAAGAAGGTCGGCGAGGCACTGCGCGAGGTCGAGCCGGACG
ATCTGGTCAAGTTCGGTCTCATTCCGGAGTTCGTTGGTCGTCTGCCGGTCATCGCCACCCTCGATGAGCTGGACGAGGCG
GCGCTGATGCAGATCCTCACCGAGCCGAAGAACGCCCTGACCAAGCAGTACGCCAAGCTGTTCGAGATGGAGGGGGTGGA
CCTGGAGTTCCGCGCCGACGCACTCAAGGCCGTGGCCAAGCGTGCGCTGGAGCGCAAGACCGGTGCCCGTGGCCTGCGTT
CGATCCTCGAGGGCGTGCTGCTCGACACCATGTACGAGATCCCCTCGCAGAGCGATGTCAGCAAGGTGGTGATCGACGAG
AGCGTGATCGAGGGCTCCTCCAAGCCGTTGCTGATCTACGAGAACAGCGAGCCGCCGGCCAAGGCCGCGCCAGACGCCTG
A

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (113-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-394)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	61.139	94.836	0.58
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.531	95.07	0.547