Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU60_RS00460 Genome accession   NZ_AP024907
Coordinates   103160..104320 (+) Length   386 a.a.
NCBI ID   WP_370738687.1    Uniprot ID   A0A1N6M821
Organism   Vibrio spartinae strain CECT 9026     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 98160..109320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU60_RS00440 trkA 98704..100080 (-) 1377 WP_074374064.1 Trk system potassium transporter TrkA -
  OCU60_RS00445 rsmB 100146..101432 (-) 1287 WP_074374080.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCU60_RS00450 fmt 101484..102449 (-) 966 WP_074374081.1 methionyl-tRNA formyltransferase -
  OCU60_RS00455 def 102462..102983 (-) 522 WP_074374065.1 peptide deformylase -
  OCU60_RS00460 dprA 103160..104320 (+) 1161 WP_370738687.1 DNA-processing protein DprA Machinery gene
  OCU60_RS00465 - 104326..104799 (+) 474 WP_182288582.1 DUF494 family protein -
  OCU60_RS00470 - 104810..105379 (+) 570 WP_074374067.1 type I DNA topoisomerase -
  OCU60_RS00475 - 105498..106628 (-) 1131 WP_074374068.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU60_RS00480 purE 106634..107119 (-) 486 WP_074374069.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU60_RS00485 - 107323..107892 (+) 570 WP_370738688.1 L-threonylcarbamoyladenylate synthase -
  OCU60_RS00490 hemF 107915..108829 (+) 915 WP_074374072.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 42287.75 Da        Isoelectric Point: 6.8645

>NTDB_id=89362 OCU60_RS00460 WP_370738687.1 103160..104320(+) (dprA) [Vibrio spartinae strain CECT 9026]
MNQPTSHVTEHDRLLMWIKLCLTPRLGIQSLLKLFGKASLESLRYYSEKEWLALGLSPAQVSYLLSGAANKVAEDCLEWQ
ARGNHRHIVTYFSPDYPALLKEIPSPPPLLFVQGEMMLLSVPQIAIVGSRHASMQGLQDAWHFANELAQHQVAVTSGLAL
GIDGQAHLGAIEGGGKTVAVLGAGLERIYPARHRGLAERILEQQTGVLVSEFCPSTPPKSMNFPRRNRIISGLSLGVLVI
EAAEKSGSLITARYAAEQNRDVFVIPGAIHQHGYRGSNALIRDGACLVQNIEQILSEVGTLSAWVKKEEKQEEKIQQNEL
FPPLIDDEELPFAEVLANVGVKATPVDILATRTHIPVHEVMRQLLELELSGHVIAVAGGYIRKGRG

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=89362 OCU60_RS00460 WP_370738687.1 103160..104320(+) (dprA) [Vibrio spartinae strain CECT 9026]
ATGAACCAACCAACCTCGCATGTCACCGAACACGATCGACTATTGATGTGGATAAAACTCTGCTTGACGCCGCGTTTGGG
AATTCAATCGTTGTTAAAGCTATTCGGCAAAGCATCGCTTGAGTCGTTGCGTTATTATTCTGAAAAAGAGTGGCTTGCTT
TGGGACTGTCGCCCGCGCAGGTTTCTTATCTGCTCTCCGGGGCCGCGAATAAAGTGGCTGAAGATTGCCTCGAATGGCAA
GCGCGTGGCAATCATCGTCATATCGTGACTTATTTTTCACCGGATTATCCTGCACTGTTGAAAGAGATTCCGTCTCCGCC
ACCCCTGTTATTTGTTCAGGGGGAGATGATGCTGCTATCTGTTCCGCAGATAGCCATTGTCGGTAGCCGCCATGCCAGTA
TGCAAGGATTGCAAGATGCATGGCATTTTGCGAATGAACTTGCTCAGCATCAAGTGGCAGTGACCAGTGGGTTGGCGCTA
GGGATTGATGGTCAGGCGCATCTGGGAGCAATCGAGGGGGGCGGCAAAACCGTTGCGGTTCTGGGGGCTGGTCTGGAACG
TATCTATCCGGCCCGGCATCGTGGGCTGGCTGAGCGGATACTTGAACAACAGACCGGTGTTCTGGTGTCAGAATTTTGTC
CCTCAACACCACCGAAATCAATGAACTTTCCTCGCCGTAACCGTATTATCAGTGGGTTATCTCTGGGAGTGCTGGTGATT
GAAGCCGCAGAAAAGAGCGGGTCATTGATTACTGCAAGATATGCTGCTGAGCAAAATCGGGATGTTTTTGTGATCCCAGG
CGCGATTCATCAGCACGGTTACCGGGGAAGTAATGCATTAATTCGTGATGGCGCTTGCTTAGTTCAAAATATCGAACAAA
TACTCTCTGAAGTTGGTACGTTATCTGCTTGGGTAAAGAAAGAAGAGAAGCAAGAAGAGAAAATTCAGCAAAATGAGCTT
TTTCCGCCATTAATTGACGACGAAGAATTGCCATTTGCTGAAGTGTTAGCTAACGTAGGGGTAAAAGCGACGCCAGTTGA
TATTCTTGCAACGCGAACCCATATACCAGTTCATGAAGTGATGAGACAGCTACTAGAGCTGGAATTATCCGGGCACGTGA
TTGCAGTTGCTGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(84-289)

DprA winged helix domain (DprA_WH)

(322-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6M821

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

57.909

96.632

0.56
  dprA Vibrio campbellii strain DS40M4

56.417

96.891

0.547
  dprA Glaesserella parasuis strain SC1401

42.359

96.632

0.409
  dprA Neisseria meningitidis strain C311

36.829

100

0.391
  dprA Neisseria meningitidis MC58

36.829

100

0.391
  dprA Haemophilus influenzae Rd KW20

42.899

89.378

0.383
  dprA Legionella pneumophila strain ERS1305867

48.039

79.275

0.381
  dprA Neisseria gonorrhoeae strain FA1090

35.452

100

0.376
  dprA Neisseria gonorrhoeae MS11

35.294

100

0.373

Multiple sequence alignment