Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCV37_RS00220 Genome accession   NZ_AP024903
Coordinates   51488..52648 (+) Length   386 a.a.
NCBI ID   WP_051680474.1    Uniprot ID   -
Organism   Vibrio rhizosphaerae strain LMG 23790     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 46488..57648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV37_RS00200 trkA 47019..48395 (-) 1377 WP_038180364.1 Trk system potassium transporter TrkA -
  OCV37_RS00205 rsmB 48475..49761 (-) 1287 WP_038180529.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCV37_RS00210 fmt 49813..50778 (-) 966 WP_038180363.1 methionyl-tRNA formyltransferase -
  OCV37_RS00215 def 50790..51311 (-) 522 WP_038180362.1 peptide deformylase -
  OCV37_RS00220 dprA 51488..52648 (+) 1161 WP_051680474.1 DNA-processing protein DprA Machinery gene
  OCV37_RS00225 - 52654..53127 (+) 474 WP_027694359.1 DUF494 family protein -
  OCV37_RS00230 - 53138..53719 (+) 582 WP_038180361.1 type I DNA topoisomerase -
  OCV37_RS00235 - 53858..54988 (-) 1131 WP_038180360.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCV37_RS00240 purE 54994..55479 (-) 486 WP_038180355.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCV37_RS00245 - 55695..56252 (+) 558 WP_038180353.1 L-threonylcarbamoyladenylate synthase -
  OCV37_RS00250 hemF 56270..57184 (+) 915 WP_038180346.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 42130.28 Da        Isoelectric Point: 6.2670

>NTDB_id=89300 OCV37_RS00220 WP_051680474.1 51488..52648(+) (dprA) [Vibrio rhizosphaerae strain LMG 23790]
MDPSASHTTEHDRLLIWIKLCLTPRLGIQSLLKLVSKVPLDSLSDYSEQEWFALGLTPTQITYLLSSAAKQVAEDCLEWQ
ERGNHRHILTYFSPDYPALLKEIPSPPPLLFAQGDITLLSVPQMAIVGSRHASMQGLQDAWHFANEFAQHQVAVTSGLAL
GIDGQAHLGALDGGGKTIAVLGAGLARIYPARHRGLAERMLEQQSGVLVSEFCPSTPPKSQNFPRRNRIISGLSLGVLVI
EAAEKSGSLITARYAAEQNRDVFVIPGAIHQHGYRGSNALIRDGACLVQNIEQILSEVGTLSAWVKEEEKQADKIQQNEL
FPPLIDDEELPFAELLANVGVKATPVDILAARTHIPVHEVMRQLLELELSGHVIAVAGGYIRKGRG

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=89300 OCV37_RS00220 WP_051680474.1 51488..52648(+) (dprA) [Vibrio rhizosphaerae strain LMG 23790]
ATGGACCCATCAGCCTCGCATACGACCGAACATGATCGACTATTGATCTGGATAAAACTCTGTTTGACGCCACGTCTGGG
AATTCAATCATTGTTAAAGCTAGTCAGCAAAGTACCGCTCGATTCATTGAGTGATTATTCTGAGCAAGAGTGGTTTGCTT
TGGGGCTGACGCCCACCCAGATCACTTATCTGCTCTCCAGCGCCGCAAAGCAAGTGGCTGAAGATTGCCTCGAATGGCAA
GAGCGTGGCAATCATCGTCATATCCTCACTTATTTTTCACCCGATTATCCTGCTCTGTTGAAAGAAATTCCGTCTCCGCC
GCCGCTGTTATTCGCACAGGGAGACATCACATTGCTGTCTGTCCCACAGATGGCTATTGTCGGGAGCCGACATGCCAGTA
TGCAAGGATTGCAAGATGCATGGCATTTTGCGAATGAGTTTGCTCAGCATCAGGTGGCAGTGACCAGTGGGTTGGCGTTA
GGCATTGACGGACAGGCTCATCTGGGGGCACTCGATGGTGGTGGCAAAACCATTGCTGTGTTAGGGGCTGGCTTAGCACG
TATCTATCCGGCCCGGCATCGGGGATTGGCTGAACGGATGCTTGAGCAACAATCCGGTGTTTTGGTGTCAGAATTTTGTC
CCTCAACACCACCGAAATCACAGAACTTCCCGCGCCGTAACCGGATAATCAGTGGGTTATCTTTGGGAGTATTGGTGATT
GAAGCGGCCGAAAAAAGTGGATCGCTCATTACCGCAAGGTACGCTGCGGAGCAAAATCGGGATGTTTTTGTGATCCCGGG
CGCTATTCATCAGCATGGTTATCGGGGCAGTAATGCATTAATTCGTGATGGTGCTTGCTTAGTTCAGAATATCGAACAGA
TACTCTCTGAAGTTGGTACATTATCTGCTTGGGTAAAGGAAGAAGAGAAGCAAGCCGATAAAATTCAGCAAAATGAACTT
TTTCCGCCATTAATTGACGACGAAGAATTGCCATTTGCTGAACTGTTAGCTAACGTAGGGGTAAAGGCGACACCAGTTGA
TATTCTTGCAGCGCGGACCCATATACCAGTTCATGAAGTGATGAGACAACTCCTGGAGTTGGAATTATCCGGGCACGTGA
TTGCAGTTGCTGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(86-289)

DprA winged helix domain (DprA_WH)

(323-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

57.373

96.632

0.554
  dprA Vibrio campbellii strain DS40M4

56.952

96.891

0.552
  dprA Glaesserella parasuis strain SC1401

43.979

98.964

0.435
  dprA Legionella pneumophila strain ERS1305867

45.404

93.005

0.422
  dprA Haemophilus influenzae Rd KW20

43.353

89.637

0.389
  dprA Neisseria meningitidis strain C311

35.91

100

0.373
  dprA Neisseria meningitidis MC58

35.91

100

0.373
  dprA Neisseria gonorrhoeae MS11

35.162

100

0.365
  dprA Neisseria gonorrhoeae strain FA1090

34.913

100

0.363

Multiple sequence alignment