Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   RYQ61_RS08930 Genome accession   NZ_CP136799
Coordinates   1773891..1774595 (-) Length   234 a.a.
NCBI ID   WP_102567985.1    Uniprot ID   -
Organism   Streptococcus intermedius strain XH2169     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1768891..1779595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYQ61_RS08915 (RYQ61_08915) - 1769455..1770441 (-) 987 WP_020998593.1 Gfo/Idh/MocA family protein -
  RYQ61_RS08920 (RYQ61_08920) - 1770882..1771595 (-) 714 WP_102567987.1 DUF805 domain-containing protein -
  RYQ61_RS08925 (RYQ61_08925) comEC/celB 1771673..1773907 (-) 2235 WP_102567986.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RYQ61_RS08930 (RYQ61_08930) comEA/celA/cilE 1773891..1774595 (-) 705 WP_102567985.1 helix-hairpin-helix domain-containing protein Machinery gene
  RYQ61_RS08935 (RYQ61_08935) smpB 1774763..1775230 (-) 468 WP_096362894.1 SsrA-binding protein SmpB -
  RYQ61_RS08940 (RYQ61_08940) rnr 1775396..1777532 (-) 2137 Protein_1716 ribonuclease R -
  RYQ61_RS08945 (RYQ61_08945) secG 1777623..1777856 (-) 234 WP_003024744.1 preprotein translocase subunit SecG -
  RYQ61_RS08950 (RYQ61_08950) rpmG 1777896..1778045 (-) 150 WP_003034401.1 50S ribosomal protein L33 -
  RYQ61_RS08955 (RYQ61_08955) - 1778029..1779246 (-) 1218 WP_285311070.1 multidrug efflux MFS transporter -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25361.79 Da        Isoelectric Point: 9.4255

>NTDB_id=892749 RYQ61_RS08930 WP_102567985.1 1773891..1774595(-) (comEA/celA/cilE) [Streptococcus intermedius strain XH2169]
MLEVIVAKIKEYKILVALSLIGLIIAGFFMMTSKSARQSNVGDIAQEITNAKLERKETSTETKKKQQKEETKSQKNLASE
ELEFLTVDVKGAVKNPGIYQLKKTSRINDAIQKAGGLTTDADSKSINLAQKLTDEAVIYVATMGENVTNAASNNGQTLTT
DTDGTAAQKGNKVNLNKANLSDLQSISGIGQKRAQDILDYREANGKFNSVDDLKNVSGVGAKTLEKLKEYVTVD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=892749 RYQ61_RS08930 WP_102567985.1 1773891..1774595(-) (comEA/celA/cilE) [Streptococcus intermedius strain XH2169]
ATGTTAGAGGTAATCGTCGCAAAAATCAAAGAGTATAAAATTTTAGTTGCTTTAAGCCTGATTGGTTTGATCATAGCAGG
ATTTTTTATGATGACTAGTAAATCTGCTAGACAATCTAATGTGGGAGATATTGCACAAGAGATCACAAATGCAAAACTAG
AACGGAAAGAAACTTCAACTGAAACGAAGAAAAAACAACAGAAAGAAGAAACAAAATCTCAAAAGAATTTAGCGAGTGAA
GAATTGGAATTTTTAACTGTAGATGTTAAAGGTGCTGTTAAAAATCCAGGTATTTATCAATTAAAAAAAACAAGCCGAAT
AAATGATGCTATCCAAAAAGCGGGTGGACTAACGACAGACGCTGACAGTAAATCTATCAATTTGGCTCAAAAACTAACAG
ATGAGGCTGTGATTTATGTGGCAACTATGGGTGAAAATGTAACAAATGCTGCAAGTAATAATGGACAAACTTTAACGACA
GATACCGATGGAACTGCGGCACAAAAAGGGAATAAGGTCAATCTAAATAAGGCTAATTTGTCTGATTTACAGTCTATTTC
TGGTATCGGACAAAAGCGCGCTCAAGATATTTTAGATTATCGTGAGGCAAATGGAAAATTTAATTCTGTTGATGATCTTA
AAAATGTATCAGGAGTTGGTGCTAAAACATTAGAGAAATTGAAAGAATATGTCACAGTGGATTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-232)

SLBB domain (SLBB)

(87-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis SK321

50.633

100

0.513
  comEA/celA/cilE Streptococcus mitis NCTC 12261

50.644

99.573

0.504
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50.215

99.573

0.5
  comEA/celA/cilE Streptococcus pneumoniae D39

49.785

99.573

0.496
  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.785

99.573

0.496
  comEA/celA/cilE Streptococcus pneumoniae R6

49.785

99.573

0.496
  comEA Streptococcus thermophilus LMD-9

42.308

100

0.423
  comEA Lactococcus lactis subsp. cremoris KW2

38.197

99.573

0.38