Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RAS18_RS09070 Genome accession   NZ_CP136635
Coordinates   1767438..1768688 (+) Length   416 a.a.
NCBI ID   WP_406621992.1    Uniprot ID   -
Organism   Bacillus atrophaeus subsp. globigii strain Hab-5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1762438..1773688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RAS18_RS09040 yfmH 1762521..1763807 (+) 1287 WP_061571601.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  RAS18_RS09045 ymfI 1763864..1764592 (+) 729 WP_268512509.1 elongation factor P 5-aminopentanone reductase -
  RAS18_RS09050 - 1764673..1764930 (+) 258 WP_003328873.1 DUF3243 domain-containing protein -
  RAS18_RS09055 - 1765060..1765851 (+) 792 WP_003328872.1 YmfK family protein -
  RAS18_RS09060 - 1765870..1766787 (+) 918 WP_406621877.1 helix-turn-helix domain-containing protein -
  RAS18_RS09065 pgsA 1766838..1767419 (+) 582 WP_003328870.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RAS18_RS09070 cinA 1767438..1768688 (+) 1251 WP_406621992.1 competence/damage-inducible protein A Machinery gene
  RAS18_RS09075 recA 1768860..1769903 (+) 1044 WP_061571604.1 recombinase RecA Machinery gene
  RAS18_RS09080 - 1770190..1771419 (+) 1230 WP_406621878.1 serine hydrolase domain-containing protein -
  RAS18_RS09085 rny 1771678..1773240 (+) 1563 WP_003328865.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45194.43 Da        Isoelectric Point: 4.9163

>NTDB_id=892030 RAS18_RS09070 WP_406621992.1 1767438..1768688(+) (cinA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
MELGKKAEIIAVGSELLLGQIANTNAQFISKGLAEIGINVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLDDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANKFGMAPGMLTEHEARLYMLLPGPPSEL
HPMFENEAKPLLLEKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADESETERLL
KETEAVILDRVGEFFYGYDDTSLVKELSKTCKEKGMTLSSAESFTGGLFAEWLTDLSGASQLFAGGVVCYSNEMKQHTLG
VKPDTLQRFGAVSKECAGELASGIKRLTGSDIGISFTGVAGPEGQEGHAPGHVFIGISADGKEEVHEFNFAGSRTGVRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=892030 RAS18_RS09070 WP_406621992.1 1767438..1768688(+) (cinA) [Bacillus atrophaeus subsp. globigii strain Hab-5]
ATGGAGTTAGGAAAAAAAGCAGAAATTATTGCGGTCGGTTCAGAGCTTTTACTCGGTCAGATCGCCAATACCAATGCTCA
ATTTATCAGTAAAGGGCTTGCCGAGATCGGCATTAATGTGTTTTATCATACAGCTGTCGGAGACAACCCTGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGTTCTGATTTTATCATTTTTTCAGGAGGGCTCGGACCGACGAAGGATGATTTA
ACAAAAGAAACAATCGCAAATGTGCTGGGCCGTCCGCTCGTTCTTGATGATGAGGCTTTTCAATCAATTGAAGATTATTT
CAAGAGAACAAAGCGTACGATGTCACCAAATAACCGTAAACAGGCGCTTGTGATTGAAGGCTCAGATGTATTGGCCAATA
AATTCGGCATGGCGCCGGGGATGCTGACAGAGCACGAAGCCCGTCTTTATATGCTGCTTCCCGGACCGCCGAGCGAACTG
CACCCTATGTTTGAAAACGAGGCCAAGCCGCTTCTTCTTGAAAAACTCGGATCAAATGAAAAAATCGTTTCAACCGTTCT
CCGTTTTTTTGGAATCGGCGAGTCCCAGCTTGAAGCTGATTTAGAAGATATTATTGATGCACAGACCAATCCGACAATTG
CTCCTTTGGCTGCTGACGGAGAAGTGACGCTGCGCCTCACTGCAAAGCATGCGGATGAATCGGAAACAGAGCGGCTGTTA
AAAGAGACTGAAGCCGTGATTTTAGACCGTGTCGGAGAGTTTTTCTACGGGTATGATGATACATCTCTTGTTAAAGAGCT
TTCAAAAACGTGCAAGGAAAAAGGAATGACACTTTCTTCAGCGGAGAGCTTTACAGGCGGTCTGTTTGCTGAATGGCTGA
CTGATTTAAGCGGTGCTTCGCAATTGTTTGCCGGCGGCGTTGTTTGCTATTCAAATGAGATGAAGCAGCACACCTTGGGG
GTAAAGCCTGACACCCTGCAGCGGTTCGGAGCTGTCAGCAAAGAATGCGCGGGAGAGCTTGCCTCGGGGATTAAACGGCT
GACGGGCAGTGACATTGGAATCAGTTTTACCGGCGTGGCCGGTCCTGAAGGGCAAGAGGGCCATGCCCCGGGACATGTCT
TTATCGGCATTTCTGCGGACGGAAAAGAAGAGGTTCATGAATTTAACTTTGCAGGCTCCAGAACAGGCGTCAGAAAGCGC
GCTGCCAAATACGGATGTCATTTAATCCTGAAACTCTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.904

100

0.899
  cinA Streptococcus mitis NCTC 12261

46.89

100

0.471
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.469
  cinA Streptococcus mitis SK321

46.411

100

0.466
  cinA Streptococcus pneumoniae Rx1

46.411

100

0.466
  cinA Streptococcus pneumoniae R6

46.411

100

0.466
  cinA Streptococcus mutans UA159

46.731

99.279

0.464
  cinA Streptococcus pneumoniae D39

46.172

100

0.464
  cinA Streptococcus suis isolate S10

41.432

93.99

0.389