Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | RY930_RS05110 | Genome accession | NZ_CP136589 |
| Coordinates | 1075990..1076310 (-) | Length | 106 a.a. |
| NCBI ID | WP_317114635.1 | Uniprot ID | - |
| Organism | Aeromonas veronii strain BIM B-1812 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1070990..1081310
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RY930_RS05090 (RY930_05090) | - | 1071386..1072084 (-) | 699 | WP_005349201.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| RY930_RS05095 (RY930_05095) | - | 1072325..1073296 (+) | 972 | WP_317114634.1 | response regulator | - |
| RY930_RS05100 (RY930_05100) | - | 1073371..1074768 (-) | 1398 | WP_047436211.1 | peptide MFS transporter | - |
| RY930_RS05105 (RY930_05105) | galU | 1074982..1075893 (-) | 912 | WP_005339121.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| RY930_RS05110 (RY930_05110) | comEA/comE1 | 1075990..1076310 (-) | 321 | WP_317114635.1 | ComEA family DNA-binding protein | Machinery gene |
| RY930_RS05115 (RY930_05115) | pta | 1076689..1078869 (-) | 2181 | WP_005339119.1 | phosphate acetyltransferase | - |
| RY930_RS05120 (RY930_05120) | - | 1078925..1080127 (-) | 1203 | WP_005349210.1 | acetate kinase | - |
| RY930_RS05125 (RY930_05125) | yfbV | 1080432..1080872 (+) | 441 | WP_317114636.1 | terminus macrodomain insulation protein YfbV | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11258.26 Da Isoelectric Point: 9.9853
>NTDB_id=891786 RY930_RS05110 WP_317114635.1 1075990..1076310(-) (comEA/comE1) [Aeromonas veronii strain BIM B-1812]
MLMKKLSAIMLLACLPLFSQPVLAADKAAPKQTTTTAVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
MLMKKLSAIMLLACLPLFSQPVLAADKAAPKQTTTTAVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=891786 RY930_RS05110 WP_317114635.1 1075990..1076310(-) (comEA/comE1) [Aeromonas veronii strain BIM B-1812]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGCTGGCCTGCTTGCCACTGTTCAGCCAACCCGTGCTGGCCGCAGATAA
GGCAGCGCCCAAGCAAACAACCACGACCGCGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACT
TCAGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGCTGGCCTGCTTGCCACTGTTCAGCCAACCCGTGCTGGCCGCAGATAA
GGCAGCGCCCAAGCAAACAACCACGACCGCGGTCGCCAAGGAGTCCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACT
TCAGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
46.018 |
100 |
0.491 |
| comEA | Vibrio cholerae strain A1552 |
48.113 |
100 |
0.481 |
| comEA | Vibrio cholerae C6706 |
48.113 |
100 |
0.481 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
44.33 |
91.509 |
0.406 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
65.625 |
60.377 |
0.396 |
| comEA | Legionella pneumophila str. Paris |
40.404 |
93.396 |
0.377 |
| comEA | Legionella pneumophila strain ERS1305867 |
40.404 |
93.396 |
0.377 |
| comEA | Acinetobacter baylyi ADP1 |
51.316 |
71.698 |
0.368 |
| comEA | Vibrio campbellii strain DS40M4 |
37.143 |
99.057 |
0.368 |