Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RYX39_RS09315 Genome accession   NZ_CP136430
Coordinates   1795907..1797157 (+) Length   416 a.a.
NCBI ID   WP_101861306.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1790907..1802157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS09285 (RYX39_09285) yfmH 1790994..1792280 (+) 1287 WP_105954257.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  RYX39_RS09290 (RYX39_09290) ymfI 1792332..1793060 (+) 729 WP_255004615.1 elongation factor P 5-aminopentanone reductase -
  RYX39_RS09295 (RYX39_09295) - 1793140..1793397 (+) 258 WP_024121451.1 DUF3243 domain-containing protein -
  RYX39_RS09300 (RYX39_09300) - 1793527..1794318 (+) 792 WP_024121452.1 YmfK family protein -
  RYX39_RS09305 (RYX39_09305) - 1794385..1795257 (+) 873 WP_255004727.1 RodZ family helix-turn-helix domain-containing protein -
  RYX39_RS09310 (RYX39_09310) pgsA 1795307..1795888 (+) 582 WP_010334305.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RYX39_RS09315 (RYX39_09315) cinA 1795907..1797157 (+) 1251 WP_101861306.1 competence/damage-inducible protein A Machinery gene
  RYX39_RS09320 (RYX39_09320) recA 1797330..1798376 (+) 1047 WP_010334307.1 recombinase RecA Machinery gene
  RYX39_RS09325 (RYX39_09325) - 1798550..1799728 (+) 1179 WP_316961236.1 serine hydrolase domain-containing protein -
  RYX39_RS09330 (RYX39_09330) rny 1800015..1801577 (+) 1563 WP_010334309.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45502.80 Da        Isoelectric Point: 5.0594

>NTDB_id=891027 RYX39_RS09315 WP_101861306.1 1795907..1797157(+) (cinA) [Bacillus halotolerans strain Q2H2]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANVLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHDSRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITLSAAESFTGGLFSEWLTDLSGASALFSGGVVCYSNEVKQNVLG
VKKETLDRFGAVSEECASELAKGVQQLTGSDIGISFTGVAGPDTQEGHAPGHVFIGIFANGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=891027 RYX39_RS09315 WP_101861306.1 1795907..1797157(+) (cinA) [Bacillus halotolerans strain Q2H2]
ATGGAATTTCCAAAAAAAGCAGAGATTATTGCAGTCGGTTCAGAGCTCTTACTCGGTCAGATTGCTAATACAAATGCTCA
ATTTATCAGCAAACAGCTGGCAGAAATCGGAGTAAACGTATTTTACCATACAGCAGTCGGTGATAATCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAGCGCTCTGATTTTATTATTTTTTCAGGAGGGCTCGGACCGACAAAAGATGATTTA
ACAAAAGAAACAATAGCAAATGTGCTGGGACGTCCGCTCGTTTTAAATGATGAGGCGTTTCAATCCATTGAGGATTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTCATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCGCCGGGAATGCTTACAGAGCATGATTCGCGCTTTTATATGCTTCTTCCCGGGCCGCCAAGCGAATTG
CGTCCGATGTTTGAAAATGAGGCAAAACCGCTTCTTCTTAAAAAGATGGGCTCCAATGAAAAAATTGTATCAACTGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATCG
CTCCGTTGGCAGCGGACGGAGAGGTGACGCTTCGCCTGACAGCAAAACATGCCGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAAACAGAAGCCGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGCTACGACGATACATCGCTTGTGAAAGAGCT
ATCTAAAGCATGCAAGGAAAAAGGCATCACGCTTTCTGCCGCAGAAAGCTTTACCGGCGGGCTGTTTTCCGAATGGCTGA
CAGACCTTAGCGGCGCTTCAGCATTGTTTTCCGGCGGCGTTGTTTGCTATTCAAACGAAGTGAAGCAAAATGTCCTCGGC
GTCAAAAAGGAAACATTGGACCGTTTCGGCGCAGTCAGCGAGGAATGCGCATCTGAGCTTGCAAAGGGTGTTCAGCAGCT
CACTGGAAGCGATATTGGCATTAGCTTTACCGGTGTTGCCGGCCCTGATACTCAAGAAGGCCATGCACCTGGACATGTGT
TTATCGGTATTTTTGCAAACGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCAGGCTCCAGAACAGGAATCAGAAAACGT
GCTGCTAAATATGGCTGCCATTTAATTTTAAAACTGTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

96.154

100

0.962
  cinA Streptococcus mitis NCTC 12261

46.651

100

0.469
  cinA Streptococcus mitis SK321

46.651

100

0.469
  cinA Streptococcus pneumoniae TIGR4

46.411

100

0.466
  cinA Streptococcus mutans UA159

46.731

99.279

0.464
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.464
  cinA Streptococcus pneumoniae R6

46.172

100

0.464
  cinA Streptococcus pneumoniae D39

45.933

100

0.462
  cinA Streptococcus suis isolate S10

42.287

90.385

0.382