Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RXV79_RS21545 Genome accession   NZ_CP136336
Coordinates   4575282..4576508 (+) Length   408 a.a.
NCBI ID   WP_316700144.1    Uniprot ID   -
Organism   Piscinibacter gummiphilus strain SBD 7-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4570282..4581508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RXV79_RS21520 (RXV79_21520) rpmA 4571444..4571704 (-) 261 WP_201811306.1 50S ribosomal protein L27 -
  RXV79_RS21525 (RXV79_21525) rplU 4571718..4572029 (-) 312 WP_296727604.1 50S ribosomal protein L21 -
  RXV79_RS21530 (RXV79_21530) ispB 4572277..4573218 (+) 942 WP_316700142.1 octaprenyl diphosphate synthase -
  RXV79_RS21540 (RXV79_21540) pilB 4573487..4575208 (+) 1722 WP_316700143.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RXV79_RS21545 (RXV79_21545) pilC 4575282..4576508 (+) 1227 WP_316700144.1 type II secretion system F family protein Machinery gene
  RXV79_RS21550 (RXV79_21550) - 4576513..4577445 (+) 933 WP_316700145.1 A24 family peptidase -
  RXV79_RS21555 (RXV79_21555) coaE 4577474..4578118 (+) 645 WP_316700146.1 dephospho-CoA kinase -
  RXV79_RS21560 (RXV79_21560) zapD 4578115..4578870 (+) 756 WP_316700147.1 cell division protein ZapD -
  RXV79_RS21565 (RXV79_21565) - 4578879..4579103 (+) 225 WP_316700148.1 DNA gyrase inhibitor YacG -
  RXV79_RS21570 (RXV79_21570) - 4579594..4580265 (+) 672 WP_316700149.1 hypothetical protein -
  RXV79_RS21575 (RXV79_21575) - 4580560..4580787 (-) 228 WP_316700150.1 hypothetical protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44297.14 Da        Isoelectric Point: 9.7751

>NTDB_id=890082 RXV79_RS21545 WP_316700144.1 4575282..4576508(+) (pilC) [Piscinibacter gummiphilus strain SBD 7-3]
MATAAATAARNVKEFVFEWEGKDKNGKVVRGEIRAGGEAMVSASLRRQGILITKVKKRRTTGGKAIKQKDIAIFTRQLST
MMRAGVPLLQAFDIVARGSTNAKLTKLLIDIRSDVETGTSLSSAFRKHPLYFDALYCNLVEAGEAGGILDTLLDRLAIYQ
EKTMAIKNKIKSALIYPVAVMVVAFVVLAIIMLFVIPVFKDVFKSFGADLPAPTLFVIGMSEIFTKYWWAIFGFLGGGIY
FFLESWKRSEKMQRTMDRLLLKVPVFGDLVNKSSVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVFKDATDQIQKDVS
TGASLTASMQTTGVFPTMVIQMCAIGEESGSLDAMLGKAAEFYEDEVDEAVKGLSSLMEPFIIVILGALIGGIVVSMYLP
IFKLGAVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=890082 RXV79_RS21545 WP_316700144.1 4575282..4576508(+) (pilC) [Piscinibacter gummiphilus strain SBD 7-3]
ATGGCAACTGCAGCAGCAACCGCGGCACGCAACGTCAAGGAATTTGTCTTCGAATGGGAAGGCAAGGACAAGAACGGCAA
GGTGGTCCGTGGTGAGATCCGCGCGGGCGGTGAGGCGATGGTCAGCGCAAGCCTGCGCCGCCAGGGAATCCTGATCACCA
AGGTCAAGAAGCGCCGCACGACCGGCGGCAAGGCGATCAAGCAGAAGGACATCGCCATCTTCACGCGCCAGCTGTCGACC
ATGATGCGTGCGGGTGTACCGCTCCTGCAGGCCTTCGACATCGTCGCACGGGGCAGCACCAACGCGAAGTTGACCAAGCT
GCTCATCGACATCCGCAGCGATGTCGAGACCGGCACGAGCCTGTCGTCGGCGTTCCGCAAGCATCCGCTGTACTTCGACG
CGCTGTACTGCAACCTCGTCGAGGCTGGCGAAGCTGGCGGTATTCTCGACACGCTGCTGGATCGCTTGGCCATCTATCAA
GAGAAGACGATGGCCATCAAGAACAAGATCAAGTCCGCCTTGATCTATCCGGTGGCCGTGATGGTCGTGGCCTTCGTCGT
GCTGGCGATCATCATGCTGTTCGTGATTCCCGTGTTCAAGGACGTCTTCAAGTCTTTCGGCGCAGATCTGCCAGCTCCAA
CGCTGTTCGTGATCGGCATGTCGGAAATATTTACCAAGTACTGGTGGGCCATCTTCGGTTTCCTGGGCGGTGGCATCTAC
TTCTTCCTCGAGTCCTGGAAACGTTCTGAGAAGATGCAGCGCACCATGGATCGTCTTCTGCTGAAGGTCCCGGTGTTCGG
CGACTTGGTCAACAAATCCTCGGTGGCCCGTTGGACCCGAACGCTCTCCACGATGTTCGCGGCCGGCGTTCCACTGGTGG
AGGCGCTGGATTCCGTTGGAGGCGCTTCCGGCAACGCCGTCTTCAAGGATGCGACTGACCAGATCCAAAAGGACGTGTCC
ACCGGCGCCAGCCTGACGGCATCGATGCAAACCACTGGCGTGTTCCCCACCATGGTGATCCAGATGTGCGCAATTGGCGA
GGAATCCGGTTCGCTGGATGCCATGCTGGGCAAGGCCGCAGAGTTCTACGAGGATGAAGTCGATGAGGCCGTCAAAGGTC
TGTCGTCGCTGATGGAGCCCTTCATCATCGTCATCCTGGGCGCTTTAATTGGCGGGATCGTGGTGTCCATGTACCTGCCC
ATCTTCAAGCTCGGTGCAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.198

99.02

0.547
  pilG Neisseria meningitidis 44/76-A

52.75

98.039

0.517
  pilG Neisseria gonorrhoeae MS11

52.75

98.039

0.517
  pilC Legionella pneumophila strain ERS1305867

52.778

97.059

0.512
  pilC Acinetobacter baylyi ADP1

50.754

97.549

0.495
  pilC Acinetobacter baumannii D1279779

49.874

97.304

0.485
  pilC Vibrio cholerae strain A1552

41.457

97.549

0.404
  pilC Vibrio campbellii strain DS40M4

39.75

98.039

0.39
  pilC Thermus thermophilus HB27

38.614

99.02

0.382