Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU45_RS00305 Genome accession   NZ_AP024873
Coordinates   66279..67439 (+) Length   386 a.a.
NCBI ID   WP_370737062.1    Uniprot ID   -
Organism   Vibrio gazogenes strain ATCC 29988     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 61279..72439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU45_RS00285 trkA 61811..63187 (-) 1377 WP_072963452.1 Trk system potassium transporter TrkA -
  OCU45_RS00290 rsmB 63266..64552 (-) 1287 WP_072963485.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCU45_RS00295 fmt 64604..65569 (-) 966 WP_072963454.1 methionyl-tRNA formyltransferase -
  OCU45_RS00300 def 65581..66102 (-) 522 WP_072963456.1 peptide deformylase -
  OCU45_RS00305 dprA 66279..67439 (+) 1161 WP_370737062.1 DNA-processing protein DprA Machinery gene
  OCU45_RS00310 - 67445..67918 (+) 474 WP_205409204.1 DUF494 family protein -
  OCU45_RS00315 - 67929..68498 (+) 570 WP_072963461.1 type I DNA topoisomerase -
  OCU45_RS00320 - 68610..69740 (-) 1131 WP_072963463.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU45_RS00325 purE 69746..70231 (-) 486 WP_072963465.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU45_RS00330 - 70448..71005 (+) 558 WP_072963468.1 Sua5/YciO/YrdC/YwlC family protein -
  OCU45_RS00335 hemF 71023..71937 (+) 915 WP_072963471.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 386 a.a.        Molecular weight: 42183.58 Da        Isoelectric Point: 7.0052

>NTDB_id=88975 OCU45_RS00305 WP_370737062.1 66279..67439(+) (dprA) [Vibrio gazogenes strain ATCC 29988]
MYQSASHVTEHDRLLMWIKLCLTPRLGTQSLLKLLGKASLESLSHYSEKEWLALGLSPAQVSYLLSGAANQVAEDCLEWQ
VRGKYRHIVTYFSPDYPALLKEIPSPPPLLFVQGEISLLSVPQIAIVGSRHASMQGLQDAWHFANGFAQHQVAVTSGLAL
GIDGQAHMGAIEGGGKTIAVLGAGLERIYPARHRGLAERILEQQSGVLVSEFCPSTPPKSMNFPRRNRIISGLSLGVLVI
EAAEKSGSLITARYAVEQNRDVFVIPGAIHQHGYRGSNALIRDGACLVQNIEQVLSEVGTLSAWVKKEEKREEKIQQNEL
FPPLIDDEELPFAEVLANVGVKATPVDILATRTHIPVHEVMRQLLELELSGHVIAVAGGYIRKGRG

Nucleotide


Download         Length: 1161 bp        

>NTDB_id=88975 OCU45_RS00305 WP_370737062.1 66279..67439(+) (dprA) [Vibrio gazogenes strain ATCC 29988]
ATGTACCAATCAGCCTCGCATGTTACAGAACACGACCGACTATTGATGTGGATAAAACTCTGCCTGACACCTCGTCTGGG
AACGCAGTCGTTGTTAAAGCTACTCGGCAAAGCATCGCTTGAGTCGTTGAGCCATTATTCTGAAAAAGAGTGGCTTGCTT
TGGGACTCTCGCCCGCGCAGGTCTCTTATCTGCTCTCCGGAGCTGCGAATCAAGTGGCCGAAGATTGCCTCGAATGGCAA
GTGCGTGGCAAGTATCGTCATATCGTGACTTATTTTTCACCGGATTATCCGGCACTATTGAAAGAAATTCCGTCTCCGCC
ACCATTGTTGTTTGTGCAGGGAGAGATTTCGCTGCTATCCGTGCCACAGATAGCCATTGTCGGCAGCCGCCATGCCAGTA
TGCAAGGATTGCAAGATGCGTGGCATTTTGCGAATGGATTTGCTCAGCATCAAGTAGCAGTGACCAGTGGGTTAGCGCTA
GGGATTGATGGTCAGGCTCATATGGGAGCAATCGAAGGTGGCGGTAAAACCATTGCTGTTTTAGGGGCGGGCTTAGAGCG
TATCTATCCGGCCCGGCATCGTGGGCTGGCTGAGCGGATACTTGAACAACAGTCCGGTGTTCTGGTGTCAGAATTTTGTC
CTTCAACACCACCGAAATCAATGAACTTTCCTCGCCGTAACCGAATTATCAGTGGGTTATCTCTGGGAGTGCTGGTGATT
GAAGCTGCGGAAAAGAGTGGGTCATTGATTACCGCAAGATATGCTGTTGAGCAAAATCGGGATGTTTTTGTGATCCCGGG
CGCGATTCATCAGCACGGTTATCGGGGAAGTAATGCACTAATCCGTGATGGCGCTTGCTTAGTTCAGAATATTGAACAGG
TACTCTCTGAAGTTGGTACGTTATCTGCTTGGGTAAAGAAAGAAGAGAAGCGAGAAGAGAAAATTCAGCAAAATGAGCTT
TTTCCGCCATTAATTGACGACGAAGAATTGCCATTTGCTGAAGTGTTAGCTAACGTAGGGGTAAAAGCGACGCCAGTTGA
TATTCTTGCAACGCGAACCCATATACCAGTTCATGAAGTGATGAGACAGCTACTAGAGCTGGAATTATCCGGGCACGTGA
TTGCAGTTGCTGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(322-379)

DNA recombination-mediator protein A (DNA_processg_A)

(87-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

56.417

96.891

0.547
  dprA Vibrio cholerae strain A1552

56.568

96.632

0.547
  dprA Legionella pneumophila strain ERS1305867

44.011

93.005

0.409
  dprA Glaesserella parasuis strain SC1401

41.823

96.632

0.404
  dprA Haemophilus influenzae Rd KW20

41.57

89.119

0.37
  dprA Neisseria meningitidis strain C311

35.75

100

0.37
  dprA Neisseria meningitidis MC58

35.75

100

0.37
  dprA Neisseria gonorrhoeae MS11

34.559

100

0.365
  dprA Neisseria gonorrhoeae strain FA1090

34.314

100

0.363

Multiple sequence alignment