Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCU28_RS03120 Genome accession   NZ_AP024871
Coordinates   650381..650638 (+) Length   85 a.a.
NCBI ID   WP_261817418.1    Uniprot ID   -
Organism   Vibrio gallicus strain CIP 107863     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 645381..655638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU28_RS03110 - 647886..648158 (+) 273 WP_261816890.1 HU family DNA-binding protein -
  OCU28_RS03115 ppiD 648342..650198 (+) 1857 WP_261816891.1 peptidylprolyl isomerase -
  OCU28_RS03120 comEA 650381..650638 (+) 258 WP_261817418.1 helix-hairpin-helix domain-containing protein Machinery gene
  OCU28_RS03125 rrtA 650635..651174 (-) 540 WP_261816892.1 rhombosortase -
  OCU28_RS03130 - 651182..651802 (+) 621 WP_261816893.1 tRNA-uridine aminocarboxypropyltransferase -
  OCU28_RS03135 - 651799..653133 (-) 1335 WP_390623790.1 anti-phage deoxyguanosine triphosphatase -
  OCU28_RS03140 yfbR 653134..653721 (-) 588 WP_261816894.1 5'-deoxynucleotidase -
  OCU28_RS03145 - 653766..654980 (-) 1215 WP_261816895.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 85 a.a.        Molecular weight: 9140.37 Da        Isoelectric Point: 5.0637

>NTDB_id=88950 OCU28_RS03120 WP_261817418.1 650381..650638(+) (comEA) [Vibrio gallicus strain CIP 107863]
MSLAAEQSTAMPDNGKYEGIEVRININTATSEELAAMLIGVGQTKAEHIVAFREVHGAFKSADDLQLVKGIGAATVDKNR
QRIEL

Nucleotide


Download         Length: 258 bp        

>NTDB_id=88950 OCU28_RS03120 WP_261817418.1 650381..650638(+) (comEA) [Vibrio gallicus strain CIP 107863]
ATGAGCCTTGCAGCTGAACAATCTACAGCTATGCCTGATAATGGGAAATATGAAGGTATTGAAGTCCGCATTAATATCAA
TACTGCAACCAGTGAAGAACTTGCCGCAATGTTGATTGGCGTTGGACAAACCAAAGCTGAACATATTGTGGCGTTTAGGG
AGGTGCATGGCGCTTTCAAAAGTGCCGATGACCTGCAATTAGTAAAGGGTATTGGTGCGGCTACAGTAGATAAGAATCGA
CAGCGTATTGAGCTTTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

54.118

100

0.541
  comEA Vibrio campbellii strain DS40M4

52.941

100

0.529
  comEA Vibrio cholerae strain A1552

48.235

100

0.482
  comEA Vibrio cholerae C6706

48.235

100

0.482
  comEA Acinetobacter baylyi ADP1

45.238

98.824

0.447
  comE1/comEA Haemophilus influenzae Rd KW20

54.098

71.765

0.388
  comEA Streptococcus thermophilus LMD-9

50.82

71.765

0.365

Multiple sequence alignment