Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU35_RS13090 Genome accession   NZ_AP024864
Coordinates   2810276..2811406 (-) Length   376 a.a.
NCBI ID   WP_017029764.1    Uniprot ID   -
Organism   Vibrio breoganii strain CAIM 1829     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2805276..2816406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU35_RS13060 hemF 2805907..2806812 (-) 906 WP_017029758.1 oxygen-dependent coproporphyrinogen oxidase -
  OCU35_RS13065 - 2806816..2807373 (-) 558 WP_065599575.1 L-threonylcarbamoyladenylate synthase -
  OCU35_RS13070 purE 2807558..2808043 (+) 486 WP_017029760.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU35_RS13075 - 2808048..2809163 (+) 1116 WP_102359812.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU35_RS13080 - 2809238..2809792 (-) 555 WP_102359811.1 type I DNA topoisomerase -
  OCU35_RS13085 - 2809800..2810273 (-) 474 WP_017029763.1 DUF494 family protein -
  OCU35_RS13090 dprA 2810276..2811406 (-) 1131 WP_017029764.1 DNA-processing protein DprA Machinery gene
  OCU35_RS13095 def 2811516..2812025 (+) 510 WP_261825474.1 peptide deformylase -
  OCU35_RS13100 fmt 2812042..2812989 (+) 948 WP_017243442.1 methionyl-tRNA formyltransferase -
  OCU35_RS13105 rsmB 2813045..2814334 (+) 1290 WP_017029767.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  OCU35_RS13110 trkA 2814362..2815738 (+) 1377 WP_017029768.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41182.26 Da        Isoelectric Point: 7.0236

>NTDB_id=88907 OCU35_RS13090 WP_017029764.1 2810276..2811406(-) (dprA) [Vibrio breoganii strain CAIM 1829]
MKEQQITAWLTLCMTPRLSGVRLQKILEFLSPQQLLSLSKKELFSLKFTEPQVRFLTATSNQSVDKCLEWANKDGNHLLI
AEDKETYPPLLKEIPSFPPVLFVQGEVTTLCSTQVGIVGSRNSSQDGLYITRQFSSQLTKVGVTITSGLALGVDGHAHQA
CLEQNGKTIAVLGSGFDFLYPKQHKSLAQRIKENGALVSEFPPFYPPRAYNFPRRNRIISGLSVGVLVVEAAQKSGSLIT
ARFALEQGRDVYAVPGSVLNPNAAGCNQLLRDGAVLVRDAQDIVHEINGLVNWSSTIQQEAALSLPPSVEKGEQREQTET
GNQPILDLLGERPVAVDFLAERAHLPVNQVMMQLLELELQGIVASVVGGYIRLRGS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=88907 OCU35_RS13090 WP_017029764.1 2810276..2811406(-) (dprA) [Vibrio breoganii strain CAIM 1829]
ATGAAAGAACAACAGATAACAGCATGGCTTACGCTCTGTATGACGCCTCGTTTAAGTGGAGTTAGGTTGCAGAAAATCCT
TGAGTTTCTTTCCCCTCAACAACTGTTATCTCTGTCAAAAAAGGAGCTGTTTTCTCTTAAGTTTACTGAGCCTCAGGTAC
GGTTTTTAACGGCCACATCCAATCAAAGTGTCGATAAATGCCTAGAGTGGGCAAATAAAGACGGTAACCACTTACTCATA
GCAGAAGACAAAGAAACGTATCCGCCTTTGCTAAAAGAAATCCCCAGCTTTCCTCCGGTACTGTTTGTTCAGGGGGAGGT
GACAACACTGTGCTCGACCCAAGTGGGTATCGTTGGTAGCCGAAATAGCTCTCAAGATGGCCTATACATTACTCGCCAAT
TTTCTTCGCAACTGACCAAAGTTGGCGTGACGATCACCAGTGGTTTAGCTCTGGGAGTGGATGGTCATGCGCATCAGGCC
TGTTTAGAGCAGAACGGAAAAACAATTGCCGTATTAGGGAGTGGCTTTGATTTTTTATACCCCAAGCAACACAAGTCGTT
AGCACAGCGAATCAAAGAGAATGGCGCGCTTGTTTCTGAGTTTCCGCCCTTTTATCCACCGAGAGCGTATAACTTCCCAA
GGCGTAATCGAATCATTAGCGGCTTATCTGTTGGCGTGTTGGTGGTTGAGGCGGCGCAAAAAAGTGGATCTTTAATAACG
GCGCGTTTTGCCCTAGAGCAAGGGCGCGATGTGTACGCAGTTCCGGGTTCGGTGCTCAACCCCAATGCTGCGGGGTGCAA
TCAATTGCTTCGAGATGGAGCGGTTTTAGTGAGAGATGCGCAAGATATTGTTCATGAAATTAATGGCTTAGTTAACTGGT
CTTCTACAATACAACAAGAGGCCGCTTTATCTTTGCCGCCGTCAGTTGAAAAGGGAGAACAAAGAGAGCAAACGGAGACA
GGAAATCAGCCAATACTGGATCTGCTGGGAGAGAGGCCTGTGGCAGTTGATTTTTTAGCAGAAAGGGCCCATTTACCCGT
AAATCAGGTTATGATGCAGTTATTGGAGCTGGAGCTTCAAGGTATAGTGGCTTCAGTCGTTGGTGGTTACATTAGATTAA
GGGGGAGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)

DprA winged helix domain (DprA_WH)

(316-369)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

49.864

97.606

0.487
  dprA Vibrio cholerae strain A1552

47.849

98.936

0.473
  dprA Neisseria meningitidis strain C311

39.651

100

0.423
  dprA Neisseria meningitidis MC58

39.651

100

0.423
  dprA Glaesserella parasuis strain SC1401

42.627

99.202

0.423
  dprA Legionella pneumophila strain ERS1305867

41.667

98.936

0.412
  dprA Neisseria gonorrhoeae MS11

38.653

100

0.412
  dprA Neisseria gonorrhoeae strain FA1090

38.653

100

0.412
  dprA Haemophilus influenzae Rd KW20

45.21

88.83

0.402

Multiple sequence alignment