Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OCU87_RS16810 Genome accession   NZ_AP024850
Coordinates   3650927..3652027 (-) Length   366 a.a.
NCBI ID   WP_062690444.1    Uniprot ID   -
Organism   Photobacterium sanguinicancri strain CECT 7579     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3645927..3657027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU87_RS16780 hemF 3646491..3647396 (-) 906 WP_261857593.1 oxygen-dependent coproporphyrinogen oxidase -
  OCU87_RS16785 tsaC 3647402..3647959 (-) 558 WP_094958746.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  OCU87_RS16790 purE 3648158..3648643 (+) 486 WP_094958741.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OCU87_RS16795 - 3648648..3649760 (+) 1113 WP_261857594.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OCU87_RS16800 - 3649844..3650431 (-) 588 WP_062690446.1 type I DNA topoisomerase -
  OCU87_RS16805 - 3650457..3650930 (-) 474 WP_062690445.1 DUF494 family protein -
  OCU87_RS16810 dprA 3650927..3652027 (-) 1101 WP_062690444.1 DNA-processing protein DprA Machinery gene
  OCU87_RS16815 - 3652024..3653097 (-) 1074 WP_261857595.1 LysM peptidoglycan-binding domain-containing protein -
  OCU87_RS16820 def 3653415..3653924 (+) 510 WP_062690443.1 peptide deformylase -
  OCU87_RS16825 fmt 3653952..3654896 (+) 945 WP_261857596.1 methionyl-tRNA formyltransferase -
  OCU87_RS16830 rsmB 3655012..3656289 (+) 1278 WP_261857597.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39162.69 Da        Isoelectric Point: 6.1642

>NTDB_id=88784 OCU87_RS16810 WP_062690444.1 3650927..3652027(-) (dprA) [Photobacterium sanguinicancri strain CECT 7579]
MNSLEDWLALTAVPGVGGVKVSRLLQHGTPTQLRAMSTEQLQTFGLSLSQISAFRTPLQAQIDRCLWWADHQDNTILTID
SPYYPALLKQIAAAPPVLFVSGQVEYLSAPQLAIVGSRSASIDGRESAYEFAGALVAANYVVTSGLALGVDGQAHHGALK
HGGATIAVLGAGLSQVYPARHRDLAAKIKEQGALVSEFWPDEKPRPQNFPRRNRVISGLSVGVLVVEAAEKSGSLITARY
ALEQGRDVFALPGSIRNPESRGCNALIKSGAKLVETPVDIFEEVGALTECAINSQLSKTLPQGEDQQLPFPALLATVGNE
ATPVDVVAERSEQPVHEVMMQLLELELLGFVTSVPGGYIRTRRGKS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=88784 OCU87_RS16810 WP_062690444.1 3650927..3652027(-) (dprA) [Photobacterium sanguinicancri strain CECT 7579]
ATGAATAGTCTGGAAGACTGGCTTGCACTCACTGCCGTTCCTGGCGTTGGTGGTGTAAAAGTCAGTCGTTTATTACAACA
TGGTACGCCAACGCAATTGCGTGCCATGTCGACAGAACAGTTACAGACATTCGGCTTATCCCTTTCTCAAATATCAGCCT
TTCGTACTCCTCTTCAAGCGCAGATTGATCGTTGCCTTTGGTGGGCCGACCATCAAGATAATACGATCCTGACTATCGAT
TCCCCCTATTATCCTGCTTTACTCAAGCAAATTGCTGCCGCGCCTCCAGTCTTATTTGTGAGTGGTCAAGTGGAATACCT
GAGTGCACCTCAGCTTGCTATTGTGGGGAGTCGCTCTGCCAGTATTGACGGGCGTGAATCAGCCTATGAGTTTGCTGGTG
CCTTGGTTGCGGCCAATTATGTGGTAACCAGTGGCTTGGCGTTAGGGGTTGATGGTCAAGCGCATCATGGCGCATTAAAG
CATGGTGGTGCGACAATTGCCGTTTTGGGAGCAGGCCTGTCACAGGTCTATCCTGCTCGTCATCGTGATTTAGCCGCTAA
GATAAAAGAGCAAGGGGCGTTAGTTTCTGAGTTCTGGCCAGATGAAAAACCACGCCCGCAAAACTTTCCTCGGCGTAACC
GAGTGATCAGTGGCTTGTCGGTGGGCGTATTAGTTGTAGAGGCCGCAGAAAAAAGTGGTTCTTTGATTACGGCGCGTTAT
GCCTTAGAGCAAGGGCGAGATGTTTTTGCTCTACCAGGTTCGATCCGTAACCCTGAAAGTAGAGGCTGTAACGCATTAAT
AAAATCGGGTGCTAAATTGGTAGAAACCCCGGTCGATATCTTTGAGGAGGTAGGTGCACTGACAGAGTGCGCAATAAATA
GTCAATTAAGCAAAACTCTGCCACAGGGTGAAGATCAGCAATTGCCATTTCCCGCCTTGTTGGCTACCGTAGGCAATGAA
GCAACACCCGTAGATGTGGTTGCTGAACGTAGTGAACAACCCGTGCATGAAGTTATGATGCAATTATTAGAGCTAGAATT
GCTTGGGTTTGTTACCTCAGTACCCGGTGGCTATATCAGAACGAGGAGGGGCAAGTCATGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(311-357)

DNA recombination-mediator protein A (DNA_processg_A)

(71-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

57.459

98.907

0.568
  dprA Vibrio cholerae strain A1552

51.882

100

0.527
  dprA Glaesserella parasuis strain SC1401

47.2

100

0.484
  dprA Legionella pneumophila strain ERS1305867

43.681

99.454

0.434
  dprA Haemophilus influenzae Rd KW20

49.481

78.962

0.391
  dprA Neisseria meningitidis strain C311

41.433

87.705

0.363
  dprA Neisseria meningitidis MC58

41.433

87.705

0.363
  dprA Acinetobacter baumannii strain A118

40.994

87.978

0.361
  dprA Acinetobacter baumannii D1279779

40.994

87.978

0.361

Multiple sequence alignment