Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCU87_RS01075 Genome accession   NZ_AP024850
Coordinates   232586..234298 (+) Length   570 a.a.
NCBI ID   WP_390960288.1    Uniprot ID   -
Organism   Photobacterium sanguinicancri strain CECT 7579     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 227586..239298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU87_RS01055 pilM 229816..230832 (+) 1017 WP_261857690.1 type IV pilus biogenesis protein PilM -
  OCU87_RS01060 - 230829..231434 (+) 606 WP_062688377.1 PilN domain-containing protein -
  OCU87_RS01065 - 231431..232039 (+) 609 WP_062688379.1 type 4a pilus biogenesis protein PilO -
  OCU87_RS01070 - 232039..232572 (+) 534 WP_062688381.1 pilus assembly protein PilP -
  OCU87_RS01075 pilQ 232586..234298 (+) 1713 WP_390960288.1 type IV pilus secretin PilQ Machinery gene
  OCU87_RS01080 aroK 234462..234980 (+) 519 WP_062688382.1 shikimate kinase AroK -
  OCU87_RS01085 aroB 235002..236081 (+) 1080 WP_094957261.1 3-dehydroquinate synthase -
  OCU87_RS01090 - 236129..237616 (+) 1488 WP_261857691.1 SPOR domain-containing protein -
  OCU87_RS01095 - 237725..238543 (+) 819 WP_261857692.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  OCU87_RS01100 - 238577..238774 (-) 198 WP_261857693.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 62598.89 Da        Isoelectric Point: 4.6986

>NTDB_id=88755 OCU87_RS01075 WP_390960288.1 232586..234298(+) (pilQ) [Photobacterium sanguinicancri strain CECT 7579]
MRRMFTKLVTEKRFSVLLYGVAWLMLLLMFPRWAYASNQIAELDFHRSETGQGILSVQLDKAQSLIDIRQSGLQLYVEVV
DATINDDMLYVLDVNDFATAVKTVETFRSEKGVKLLLTMSERFDYDYTTKGNQLDVIVTAKPKASEADPESITYKGKPIS
INFQDVPVRNVLQLIADYNDFNLVVSDTVEGNVTLRLDDVPWPQVLDIILQSKGLDKRVNGKVLLVAPKVELDGHEQQAL
AAKRKSEELAALRSELIQVKYAKAIDLASLLLGDEDGVSMLSARGSLHVDERTNSLIIKDLPESIESIKDILSALDIPVK
QVQIEARIVTVSEGDLEELGVRWGVISNNGDTTIGGSVESNLHNSGLLDRKATVDDFLNVNLGATTAGASSIAFQVAKMG
DILLDLELSALQSEEKAEIISSPRLVTTNKKTAYIEQGTEIPYLEGSSSGAVTVSFKKAVLSLMVTPQITPDNKLVLDLV
VTQDKVGKTVKTGTGEAVAIDTQRIGTQVLVNNGETLVLGGIYQHALSTKVEQVPLLGDIPFLGALFRRTKEDLDKRELL
IFVTPKIVFQ

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=88755 OCU87_RS01075 WP_390960288.1 232586..234298(+) (pilQ) [Photobacterium sanguinicancri strain CECT 7579]
ATGAGAAGGATGTTCACAAAGTTAGTGACTGAAAAGCGGTTCTCTGTGCTGCTATATGGGGTTGCTTGGCTGATGTTGCT
ATTAATGTTTCCCCGTTGGGCGTATGCAAGTAATCAAATTGCAGAACTTGATTTCCATCGTAGTGAAACAGGACAAGGTA
TTCTCAGCGTTCAATTAGATAAAGCGCAATCATTGATTGATATCCGTCAGTCTGGTTTACAGCTCTATGTCGAGGTGGTC
GATGCCACAATCAATGATGATATGCTGTATGTACTTGATGTTAATGACTTTGCTACTGCGGTGAAAACCGTAGAAACTTT
TCGAAGTGAGAAAGGCGTTAAGTTATTACTGACGATGTCAGAACGTTTTGATTATGACTATACAACCAAAGGCAATCAGC
TTGACGTGATTGTGACGGCTAAGCCAAAAGCAAGTGAAGCAGATCCAGAAAGTATTACTTACAAAGGCAAACCGATATCA
ATTAACTTCCAAGATGTACCTGTGCGTAATGTTTTGCAATTGATTGCGGATTACAACGATTTTAACTTGGTTGTTTCGGA
TACCGTTGAAGGTAATGTGACATTACGCCTTGATGATGTGCCGTGGCCGCAAGTGCTCGACATTATTTTACAGTCAAAAG
GTTTAGACAAGCGTGTTAATGGCAAAGTACTACTCGTAGCGCCGAAAGTGGAACTTGATGGTCATGAACAACAAGCGCTA
GCGGCGAAGCGTAAATCGGAAGAATTAGCCGCATTACGTTCTGAGCTGATTCAAGTGAAATACGCTAAAGCCATCGACTT
AGCCAGTTTATTACTAGGGGATGAAGACGGTGTTAGCATGCTTTCTGCTCGTGGCTCTTTACATGTGGATGAACGCACTA
ACTCACTAATCATAAAGGATCTTCCTGAGAGCATCGAAAGTATAAAAGATATTTTGAGTGCCTTGGATATTCCAGTTAAG
CAGGTCCAAATTGAAGCTCGAATCGTCACCGTGAGCGAAGGGGATTTGGAAGAGTTGGGTGTTCGTTGGGGGGTGATCAG
CAACAATGGCGATACCACTATTGGTGGCTCAGTAGAAAGCAATTTGCACAACTCAGGTTTGTTAGATCGTAAAGCGACAG
TGGATGATTTCTTGAATGTAAACCTAGGTGCAACCACCGCTGGTGCATCAAGTATTGCATTTCAGGTGGCAAAAATGGGT
GATATATTGCTAGATTTAGAACTGTCTGCACTGCAGTCTGAAGAAAAAGCTGAGATTATCTCAAGCCCTCGCTTAGTGAC
GACAAATAAGAAAACAGCGTATATCGAACAAGGTACTGAGATCCCATATCTTGAAGGGTCGTCCAGTGGTGCGGTGACGG
TTAGCTTCAAAAAAGCGGTTTTGAGCCTAATGGTGACCCCACAAATTACGCCGGATAATAAGTTAGTACTGGATTTGGTA
GTCACGCAGGATAAAGTCGGTAAAACGGTGAAAACAGGTACAGGTGAAGCCGTTGCTATCGATACTCAGCGAATTGGTAC
TCAAGTGTTAGTGAATAATGGCGAAACCTTAGTTTTAGGTGGTATTTATCAGCATGCGTTGTCGACCAAAGTCGAACAAG
TGCCACTTTTAGGGGATATTCCTTTTCTTGGGGCGCTATTTCGCCGTACAAAAGAAGACTTAGACAAGCGTGAGCTGTTG
ATTTTTGTCACTCCGAAGATTGTTTTTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(255-321)

Bacterial type II and III secretion system protein (Secretin)

(410-568)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

61.939

97.719

0.605
  pilQ Vibrio cholerae strain A1552

61.939

97.719

0.605
  pilQ Vibrio campbellii strain DS40M4

61.172

95.789

0.586
  pilQ Pseudomonas aeruginosa PAK

41.25

98.246

0.405
  pilQ Legionella pneumophila strain ERS1305867

41.989

95.263

0.4
  pilQ Legionella pneumophila strain Lp02

41.989

95.263

0.4
  pilQ Acinetobacter baumannii D1279779

38.927

100

0.395
  pilQ Acinetobacter baumannii strain A118

38.927

100

0.395
  comQ Acinetobacter baylyi ADP1

39.716

98.947

0.393

Multiple sequence alignment