Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   RRV97_RS06625 Genome accession   NZ_CP135440
Coordinates   1416051..1417547 (+) Length   498 a.a.
NCBI ID   WP_315611069.1    Uniprot ID   A0AA96SBU3
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1411051..1422547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS06605 (RRV97_06605) - 1411927..1412808 (-) 882 WP_315611067.1 lysophospholipid acyltransferase family protein -
  RRV97_RS06610 (RRV97_06610) metK 1413201..1414370 (+) 1170 WP_049351011.1 methionine adenosyltransferase -
  RRV97_RS06615 (RRV97_06615) - 1414528..1415592 (+) 1065 WP_315611068.1 DUF1176 domain-containing protein -
  RRV97_RS06620 (RRV97_06620) - 1415717..1416037 (+) 321 WP_070823276.1 accessory factor UbiK family protein -
  RRV97_RS06625 (RRV97_06625) comM 1416051..1417547 (+) 1497 WP_315611069.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RRV97_RS06630 (RRV97_06630) - 1417702..1418811 (+) 1110 WP_315611070.1 SPOR domain-containing protein -
  RRV97_RS06635 (RRV97_06635) dsbA1 1418823..1419464 (+) 642 WP_315611071.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  RRV97_RS06640 (RRV97_06640) - 1419509..1420333 (+) 825 WP_315611072.1 undecaprenyl-diphosphate phosphatase -
  RRV97_RS06645 (RRV97_06645) comP 1420406..1420900 (-) 495 WP_315611073.1 type IV pilin protein Machinery gene
  RRV97_RS06650 (RRV97_06650) comE 1421077..1421364 (-) 288 WP_049323884.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53861.04 Da        Isoelectric Point: 8.3626

>NTDB_id=886636 RRV97_RS06625 WP_315611069.1 1416051..1417547(+) (comM) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MSLALIYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQINPEKLAKYEFAGELALSGLLRPVRGALAMAWQGMQAGRSFVLPQENAEQAAVMRGIAVYGARSL
GEVAAHLNGIEPLTQTECKLPRRPSEQSKIPDLADVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASSAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPESVARYRNRISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSATVLERVTAARKIQYSRQGKVNAELSVSELDGKARIKKEAQEALGTMLEKLSLSARSFHRIMRVARTLADLAGD
EEVSKTHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=886636 RRV97_RS06625 WP_315611069.1 1416051..1417547(+) (comM) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGTCGCTTGCTTTGATTTACAGCCGCGCTTTAAGCGGTATGAACGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCTTGCCACATTTCAATATCGTCGGTTTGCCCGATACTGAAGTCAAAGAAAGCCGCGACCGCGTGCGTGCTGCCATCA
TCCAAAGCGGCTTCGACTTCCCCGCCAAGAAAATTACTGTCAACCTCGCACCGGCCGACCTCCCCAAAGAATCCGGCCGT
TTCGATTTACCGATTGCCTTAGGCATTCTTGCCGCATCGGGACAAATCAACCCTGAAAAGCTCGCGAAATACGAGTTTGC
CGGAGAATTGGCGCTGTCCGGGCTGCTACGTCCCGTACGCGGCGCACTGGCCATGGCATGGCAGGGAATGCAGGCCGGCC
GTTCGTTCGTCTTGCCGCAAGAAAATGCCGAACAGGCTGCCGTCATGCGCGGCATTGCAGTTTATGGCGCGCGTTCTTTG
GGTGAAGTGGCCGCCCATTTAAACGGTATCGAACCGTTGACACAAACCGAATGCAAACTGCCACGAAGGCCGTCTGAACA
AAGTAAAATACCCGACTTAGCCGATGTCAAAGGCCAACATACCGCCCGCCTCGCCTTGGAAATCGCCGCGGCAGGCGGAC
ACAGCCTACTGATGATGGGCCCTCCGGGAACGGGCAAATCCATGCTTTCGCAACGTTTGCCCGGTATCCTTCCGCCTTTG
ACCGAAGACGAATTGGTCGAAGTCTGGGCATTGCGTTCGCTCCTGCCTAACCATCAACAGCAACTCGACAGCAACCGCCC
TTTCCGCAGCCCTCATCACAGTGCCAGCTCGGCCGCCATGGTAGGTGGCGGTTCAGACCCTCGTCCGGGCGAAATTTCAT
TGGCGCACCATGGTGTGTTGTTTTTAGACGAATTGCCCGAGTTTGACCGTAAAGTATTAGAAGTGTTGCGCGAACCTTTG
GAAAACGGCGAAATCCATATTTCTCGCGCTGCACGCCAAGCCGTTTATCCGGCCAAGTTCCAGCTCGTCGCTGCCATGAA
CCCCTGCCCTTGCGGCTATCTCGGTCATCCGTCCAAACCTTGCCGCTGCACACCTGAAAGTGTTGCCCGCTACCGCAACA
GAATTTCAGGGCCATTGCTCGACCGTATTGATTTAACCATCGAAGTACCCAGCCTTTCCGCTGCCGAGTTAATGCAACAA
GAAGCAGGCGAATCCAGTGCCACCGTATTGGAACGCGTTACCGCCGCACGCAAAATCCAATACAGCCGACAAGGCAAAGT
CAATGCCGAACTGAGTGTCAGCGAGCTCGATGGCAAAGCCCGTATCAAAAAAGAAGCGCAAGAAGCCTTGGGAACCATGC
TTGAAAAACTGTCCCTTTCCGCTCGAAGTTTCCACCGCATTATGCGCGTCGCCCGTACGCTGGCCGATTTGGCAGGCGAC
GAAGAAGTCAGCAAAACACATGTGATGAAAGCTATCGGCTTCCGTCGCGCCCTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.187

100

0.536
  comM Vibrio campbellii strain DS40M4

52.113

99.799

0.52
  comM Glaesserella parasuis strain SC1401

49.402

100

0.498
  comM Haemophilus influenzae Rd KW20

49.699

100

0.498
  comM Legionella pneumophila str. Paris

46.931

100

0.476
  comM Legionella pneumophila strain ERS1305867

46.931

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.564

100

0.442