Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   RRV97_RS06645 Genome accession   NZ_CP135440
Coordinates   1420406..1420900 (-) Length   164 a.a.
NCBI ID   WP_315611073.1    Uniprot ID   A0AA96NB24
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415406..1425900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS06620 (RRV97_06620) - 1415717..1416037 (+) 321 WP_070823276.1 accessory factor UbiK family protein -
  RRV97_RS06625 (RRV97_06625) comM 1416051..1417547 (+) 1497 WP_315611069.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RRV97_RS06630 (RRV97_06630) - 1417702..1418811 (+) 1110 WP_315611070.1 SPOR domain-containing protein -
  RRV97_RS06635 (RRV97_06635) dsbA1 1418823..1419464 (+) 642 WP_315611071.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  RRV97_RS06640 (RRV97_06640) - 1419509..1420333 (+) 825 WP_315611072.1 undecaprenyl-diphosphate phosphatase -
  RRV97_RS06645 (RRV97_06645) comP 1420406..1420900 (-) 495 WP_315611073.1 type IV pilin protein Machinery gene
  RRV97_RS06650 (RRV97_06650) comE 1421077..1421364 (-) 288 WP_049323884.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17992.07 Da        Isoelectric Point: 10.0610

>NTDB_id=886638 RRV97_RS06645 WP_315611073.1 1420406..1420900(-) (comP) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MYLKAFDGKRNGATVQRGYSLVQLLVVMLLVSILAMTAFTAYRESVRSANLRAAHAALLENARFMEQFYAKKGSFKLTST
KWPELPVKEAGGFCIRMSGQAKGILEGKFTLKAVALDREAEPRVLRLNESLTAVVCGKMKGKGSCADGEEIFRGNDAECK
PFMG

Nucleotide


Download         Length: 495 bp        

>NTDB_id=886638 RRV97_RS06645 WP_315611073.1 1420406..1420900(-) (comP) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGTACTTAAAAGCATTTGACGGAAAACGGAATGGAGCAACTGTGCAGAGGGGGTATTCTTTGGTACAGCTGTTGGTGGT
GATGCTGCTGGTTTCGATCTTGGCGATGACGGCCTTTACGGCCTATCGGGAATCGGTCCGCTCGGCCAACCTGCGTGCGG
CGCATGCCGCGCTGCTGGAAAATGCGCGCTTTATGGAGCAGTTCTACGCGAAAAAGGGCAGCTTTAAGCTGACGTCGACG
AAGTGGCCGGAGTTGCCGGTGAAGGAGGCGGGCGGTTTCTGTATCAGGATGAGCGGCCAGGCTAAGGGGATTCTGGAGGG
TAAGTTTACTTTGAAGGCGGTGGCGCTGGACAGGGAGGCGGAGCCGAGGGTGCTGCGCTTGAACGAGTCGCTGACGGCGG
TGGTGTGCGGGAAGATGAAGGGGAAGGGCAGCTGTGCGGACGGCGAGGAGATATTTAGGGGCAATGATGCGGAGTGTAAG
CCTTTTATGGGGTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(41-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria subflava NJ9703

93.293

100

0.933
  comP Neisseria meningitidis 8013

51.007

90.854

0.463
  comP Neisseria gonorrhoeae MS11

51.02

89.634

0.457