Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   RRV97_RS06650 Genome accession   NZ_CP135440
Coordinates   1421077..1421364 (-) Length   95 a.a.
NCBI ID   WP_049323884.1    Uniprot ID   A0AA96SE73
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1416077..1426364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS06630 (RRV97_06630) - 1417702..1418811 (+) 1110 WP_315611070.1 SPOR domain-containing protein -
  RRV97_RS06635 (RRV97_06635) dsbA1 1418823..1419464 (+) 642 WP_315611071.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  RRV97_RS06640 (RRV97_06640) - 1419509..1420333 (+) 825 WP_315611072.1 undecaprenyl-diphosphate phosphatase -
  RRV97_RS06645 (RRV97_06645) comP 1420406..1420900 (-) 495 WP_315611073.1 type IV pilin protein Machinery gene
  RRV97_RS06650 (RRV97_06650) comE 1421077..1421364 (-) 288 WP_049323884.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 9743.43 Da        Isoelectric Point: 10.4923

>NTDB_id=886639 RRV97_RS06650 WP_049323884.1 1421077..1421364(-) (comE) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MKKFLFGVVAAVCTAFSLAAVNVNTASSAELEALPGIGPAKAKAIVEYRQKNGAFKSVEELKNVKGIGDAVLNKLKAEAT
VSSAAPKAAQPAVKK

Nucleotide


Download         Length: 288 bp        

>NTDB_id=886639 RRV97_RS06650 WP_049323884.1 1421077..1421364(-) (comE) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGAAGAAATTTTTATTTGGTGTAGTTGCCGCCGTTTGTACGGCGTTCTCTTTGGCTGCCGTGAACGTCAATACGGCCTC
TTCTGCGGAACTGGAGGCATTGCCGGGTATCGGCCCGGCTAAGGCGAAGGCGATTGTGGAATACCGTCAGAAGAACGGTG
CGTTCAAATCGGTGGAGGAGCTGAAAAACGTGAAGGGCATCGGTGATGCGGTGCTGAACAAGTTGAAGGCGGAGGCGACG
GTTTCTTCTGCCGCGCCTAAGGCCGCCCAACCTGCCGTGAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  comE Neisseria gonorrhoeae MS11

62.626

100

0.653
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.659

86.316

0.463