Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   RRV97_RS06635 Genome accession   NZ_CP135440
Coordinates   1418823..1419464 (+) Length   213 a.a.
NCBI ID   WP_315611071.1    Uniprot ID   -
Organism   Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1413823..1424464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRV97_RS06615 (RRV97_06615) - 1414528..1415592 (+) 1065 WP_315611068.1 DUF1176 domain-containing protein -
  RRV97_RS06620 (RRV97_06620) - 1415717..1416037 (+) 321 WP_070823276.1 accessory factor UbiK family protein -
  RRV97_RS06625 (RRV97_06625) comM 1416051..1417547 (+) 1497 WP_315611069.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  RRV97_RS06630 (RRV97_06630) - 1417702..1418811 (+) 1110 WP_315611070.1 SPOR domain-containing protein -
  RRV97_RS06635 (RRV97_06635) dsbA1 1418823..1419464 (+) 642 WP_315611071.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  RRV97_RS06640 (RRV97_06640) - 1419509..1420333 (+) 825 WP_315611072.1 undecaprenyl-diphosphate phosphatase -
  RRV97_RS06645 (RRV97_06645) comP 1420406..1420900 (-) 495 WP_315611073.1 type IV pilin protein Machinery gene
  RRV97_RS06650 (RRV97_06650) comE 1421077..1421364 (-) 288 WP_049323884.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23714.45 Da        Isoelectric Point: 9.8951

>NTDB_id=886637 RRV97_RS06635 WP_315611071.1 1418823..1419464(+) (dsbA1) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
MKQRMKQTIATLSLSLLSLSAQAATEGVDYTVLSRPIPQQQAGKIEVLEFFGYFCVHCYHLDPVLLQHSKTFAKDVSLRT
EHVVWMPEMLGLAKVAAAVNLSGLKYQANPVIFTAVYEQKINLADANVFRTWVGKQTSFDSKKLLQAYNNPAAASAAAKM
QQLTETYRIENTPTIIVGGKYKVNFSGSDWKAGTKTIDELIIKVRREQSSKPL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=886637 RRV97_RS06635 WP_315611071.1 1418823..1419464(+) (dsbA1) [Neisseria sp. DTU_2021_1001991_1_SI_NGA_ILE_055]
ATGAAGCAGCGTATGAAACAAACTATTGCCACACTCAGCCTGAGCCTGCTCAGCCTGAGTGCGCAGGCTGCTACCGAAGG
CGTGGACTATACCGTTCTTAGTCGCCCTATCCCGCAGCAGCAAGCCGGAAAAATTGAAGTGCTAGAATTTTTCGGCTACT
TCTGCGTCCATTGTTACCATCTCGATCCGGTTTTGTTGCAACACAGCAAAACCTTCGCCAAAGATGTTTCCTTACGGACA
GAACACGTCGTTTGGATGCCTGAAATGTTGGGCTTGGCCAAGGTAGCCGCTGCCGTCAATCTTTCAGGTTTAAAATATCA
GGCCAATCCAGTCATCTTCACAGCCGTTTACGAACAGAAGATTAACTTGGCTGATGCAAATGTATTCCGCACATGGGTCG
GTAAACAGACAAGTTTTGACAGTAAAAAACTGCTTCAAGCCTACAACAACCCTGCTGCCGCATCGGCTGCTGCAAAAATG
CAGCAATTGACGGAAACTTATCGAATTGAAAACACACCAACTATCATTGTCGGTGGTAAATACAAAGTCAATTTCAGCGG
TAGCGACTGGAAAGCCGGTACGAAAACCATAGACGAGCTCATCATTAAAGTCCGCCGCGAACAATCCTCAAAACCACTTT
AA

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(44-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

58.289

87.793

0.512
  dsbA2 Neisseria meningitidis MC58

57.609

86.385

0.498