Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RMQ61_RS00415 Genome accession   NZ_CP135090
Coordinates   73414..74595 (+) Length   393 a.a.
NCBI ID   WP_313920900.1    Uniprot ID   -
Organism   Streptococcus suis strain ID48908     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 68414..79595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ61_RS00400 (RMQ61_00400) mutL 69682..71619 (+) 1938 WP_313926408.1 DNA mismatch repair endonuclease MutL -
  RMQ61_RS00405 (RMQ61_00405) ruvA 71658..72248 (+) 591 WP_313920898.1 Holliday junction branch migration protein RuvA -
  RMQ61_RS00410 (RMQ61_00410) - 72808..73377 (+) 570 WP_313920899.1 DNA-3-methyladenine glycosylase I -
  RMQ61_RS00415 (RMQ61_00415) cinA 73414..74595 (+) 1182 WP_313920900.1 competence/damage-inducible protein A Machinery gene
  RMQ61_RS00420 (RMQ61_00420) recA 74647..75798 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  RMQ61_RS00425 (RMQ61_00425) spx 76034..76432 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  RMQ61_RS00430 (RMQ61_00430) - 76532..76798 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  RMQ61_RS00435 (RMQ61_00435) ruvX 76798..77217 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  RMQ61_RS00440 (RMQ61_00440) - 77229..77549 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  RMQ61_RS00445 (RMQ61_00445) - 77806..78384 (+) 579 WP_313920901.1 nucleotidyltransferase family protein -
  RMQ61_RS00450 (RMQ61_00450) rpsJ 79046..79354 (+) 309 WP_014735259.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42863.70 Da        Isoelectric Point: 4.3278

>NTDB_id=884958 RMQ61_RS00415 WP_313920900.1 73414..74595(+) (cinA) [Streptococcus suis strain ID48908]
MRAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNENRLLSVLEVASQRSDLVILCGGLGPTEDDLTKQT
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLCLNQLEED
ILQHDKLADYFYAHGEDNSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVVGQLGIESGWLSEEA
DCIRQELQADLGLAVSVLIKPESTEDNVLAKVYLTLATPSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=884958 RMQ61_RS00415 WP_313920900.1 73414..74595(+) (cinA) [Streptococcus suis strain ID48908]
ATGAGAGCAGAACTAATCGCTGTTGGGACGGAGATTTTGACAGGCCAAATCGTTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAAAACAGGCTTCTGTCTGTACTGG
AAGTAGCCAGTCAGCGGAGCGACTTGGTCATTCTCTGTGGAGGACTTGGTCCAACTGAGGATGACTTGACCAAGCAGACC
TTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTGTCCTACGCTTTTTTGGAATTGG
CGAAAGCCAGTTGGTGACTGTTTTGGCGGACTTGATTGACAAGCAGACAGACCCAACTCTTGCTCCATATGCAAAAGTTG
GAGAGGTAACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAAGCAAATCTATGTTTAAATCAGTTGGAAGAAGAC
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCCACGGAGAGGACAATAGTTTGGTCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGACAAACCATCGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGCCTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGAAAAGTCGTCGGTCAGCTAGGGATAGAATCGGGCTGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTAGGTTTGGCTGTGTCTGTGCTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATACCTCACTTTGGCTACGCCCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Competence-damaged protein (CinA)

(258-392)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

97.201

100

0.972
  cinA Streptococcus pneumoniae R6

55.529

100

0.588
  cinA Streptococcus mitis SK321

55.529

100

0.588
  cinA Streptococcus pneumoniae TIGR4

55.529

100

0.588
  cinA Streptococcus pneumoniae Rx1

55.529

100

0.588
  cinA Streptococcus mutans UA159

55.961

100

0.585
  cinA Streptococcus mitis NCTC 12261

55.288

100

0.585
  cinA Streptococcus pneumoniae D39

55.288

100

0.585
  cinA Bacillus subtilis subsp. subtilis str. 168

42.175

95.929

0.405