Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RDV63_RS05080 Genome accession   NZ_CP135084
Coordinates   1008646..1009875 (-) Length   409 a.a.
NCBI ID   WP_313908423.1    Uniprot ID   -
Organism   Rheinheimera sp. MMS21-TC3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1003646..1014875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV63_RS05050 (RDV63_05050) mutT 1004382..1004834 (+) 453 WP_313908417.1 8-oxo-dGTP diphosphatase MutT -
  RDV63_RS05055 (RDV63_05055) - 1005045..1005554 (-) 510 WP_313908418.1 hypothetical protein -
  RDV63_RS05060 (RDV63_05060) yacG 1006030..1006263 (-) 234 WP_313908419.1 DNA gyrase inhibitor YacG -
  RDV63_RS05065 (RDV63_05065) zapD 1006331..1007077 (-) 747 WP_313908420.1 cell division protein ZapD -
  RDV63_RS05070 (RDV63_05070) coaE 1007092..1007706 (-) 615 WP_313908421.1 dephospho-CoA kinase -
  RDV63_RS05075 (RDV63_05075) pilD 1007744..1008646 (-) 903 WP_313908422.1 A24 family peptidase Machinery gene
  RDV63_RS05080 (RDV63_05080) pilC 1008646..1009875 (-) 1230 WP_313908423.1 type II secretion system F family protein Machinery gene
  RDV63_RS05085 (RDV63_05085) pilB 1010044..1011738 (-) 1695 WP_313908424.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RDV63_RS05090 (RDV63_05090) - 1012082..1012270 (-) 189 WP_313908425.1 hypothetical protein -
  RDV63_RS05095 (RDV63_05095) - 1012260..1012733 (-) 474 WP_313908426.1 hypothetical protein -
  RDV63_RS05100 (RDV63_05100) - 1012738..1013514 (-) 777 WP_313908427.1 hypothetical protein -
  RDV63_RS05105 (RDV63_05105) - 1013860..1014252 (-) 393 WP_313908428.1 hypothetical protein -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44314.25 Da        Isoelectric Point: 9.5631

>NTDB_id=884818 RDV63_RS05080 WP_313908423.1 1008646..1009875(-) (pilC) [Rheinheimera sp. MMS21-TC3]
MTQANNLKIKQLDIYNYKGVNRRGTKVSGELKGANIAEVKALLRQQGITPSGVKKKPRSLFGEGKKITAADIALVTRQIA
TMLGAGVPLVQSVDLIASGSDHKNLGALMQKISVKLQAGIPLSEVLREHPKYFDELYCDLVKSGEASGALDSIFDRIAIY
KEKAEALKSKIKKAMFYPAAVLIIAGIVSSILLIFVVPQFAEIFAGFGAELPAFTQLVVKLSELMQAYWWVVLFGLIGFG
YLVKKTYGSNLRFRTWMDGLIIKAPVIGDILNKAAVARYARTLSTTFAAGVPLIEALESAAGASGNEVYKNSIMYIREEV
SSGNPMYIAMKQTKRFPEMVVQMVSIGEETGALDSMLSKVANIYEQEVDDAVDGLTALLEPMIMAVLGVVIGGLIIAMYL
PIFAMGSIV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=884818 RDV63_RS05080 WP_313908423.1 1008646..1009875(-) (pilC) [Rheinheimera sp. MMS21-TC3]
ATGACTCAGGCCAATAACCTAAAAATAAAACAGCTTGATATCTATAATTACAAAGGGGTTAACCGCCGCGGTACTAAGGT
TAGCGGTGAGTTAAAAGGCGCTAATATTGCTGAGGTTAAAGCCTTATTGCGCCAGCAAGGTATTACCCCCTCTGGGGTTA
AGAAAAAACCGCGCTCATTATTTGGCGAAGGCAAAAAAATAACTGCTGCCGATATCGCTTTAGTGACCCGGCAAATTGCC
ACTATGCTAGGCGCTGGTGTGCCTTTAGTGCAGTCGGTCGATTTAATTGCTAGTGGCTCAGACCATAAAAACTTAGGCGC
TTTAATGCAAAAGATTTCGGTTAAGCTGCAAGCTGGTATACCACTGTCTGAGGTATTACGCGAGCACCCTAAGTATTTTG
ATGAGTTATATTGTGACTTAGTTAAATCGGGCGAGGCATCAGGTGCTTTAGATAGCATTTTTGACCGTATTGCTATTTAT
AAAGAAAAGGCCGAAGCCTTAAAGTCAAAAATTAAAAAAGCCATGTTTTACCCTGCGGCTGTACTCATTATAGCCGGTAT
TGTTAGCTCTATTTTATTAATTTTTGTAGTACCGCAATTTGCCGAAATTTTTGCTGGCTTTGGCGCTGAGCTGCCGGCCT
TTACTCAGCTAGTGGTAAAATTGTCAGAACTAATGCAAGCCTATTGGTGGGTAGTGCTGTTTGGCTTAATTGGTTTTGGT
TACTTAGTTAAAAAAACCTATGGCAGCAATTTAAGGTTTAGAACCTGGATGGATGGCTTAATAATAAAAGCCCCAGTAAT
AGGCGATATTTTAAATAAAGCCGCTGTGGCCCGTTATGCCCGCACTTTATCTACTACTTTTGCCGCTGGTGTGCCTTTAA
TAGAAGCCTTAGAGTCTGCCGCTGGTGCCTCGGGTAATGAAGTGTATAAAAATTCTATTATGTATATTCGCGAAGAAGTA
TCCTCAGGTAACCCTATGTACATTGCTATGAAGCAGACTAAGCGCTTCCCGGAAATGGTAGTGCAAATGGTGTCTATAGG
TGAAGAGACCGGTGCTTTAGACAGCATGCTATCTAAAGTGGCTAATATTTATGAGCAAGAAGTAGATGATGCCGTAGATG
GCTTAACCGCCCTATTAGAGCCAATGATAATGGCGGTATTAGGTGTAGTAATAGGCGGCCTTATTATTGCTATGTACTTA
CCTATCTTTGCTATGGGTTCAATAGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(76-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.586

96.822

0.567
  pilC Legionella pneumophila strain ERS1305867

52.02

96.822

0.504
  pilC Acinetobacter baylyi ADP1

50.369

99.511

0.501
  pilC Acinetobacter baumannii D1279779

50.37

99.022

0.499
  pilC Vibrio cholerae strain A1552

44.14

98.044

0.433
  pilC Vibrio campbellii strain DS40M4

42.04

98.289

0.413
  pilG Neisseria meningitidis 44/76-A

42.448

93.888

0.399
  pilG Neisseria gonorrhoeae MS11

41.818

94.132

0.394