Detailed information NTG0884817

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RDV63_RS05075
• Genome accession: NZ_CP135084
• Coordinates: 1007744..1008646 (-)
• Length: 300 a.a.
• NCBI ID: WP_313908422.1
• Uniprot ID: -
• Organism: Rheinheimera sp. MMS21-TC3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1002744..1013646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RDV63_RS05050 (RDV63_05050)	mutT	1004382..1004834 (+)	453	WP_313908417.1	8-oxo-dGTP diphosphatase MutT	-
RDV63_RS05055 (RDV63_05055)	-	1005045..1005554 (-)	510	WP_313908418.1	hypothetical protein	-
RDV63_RS05060 (RDV63_05060)	yacG	1006030..1006263 (-)	234	WP_313908419.1	DNA gyrase inhibitor YacG	-
RDV63_RS05065 (RDV63_05065)	zapD	1006331..1007077 (-)	747	WP_313908420.1	cell division protein ZapD	-
RDV63_RS05070 (RDV63_05070)	coaE	1007092..1007706 (-)	615	WP_313908421.1	dephospho-CoA kinase	-
RDV63_RS05075 (RDV63_05075)	pilD	1007744..1008646 (-)	903	WP_313908422.1	A24 family peptidase	Machinery gene
RDV63_RS05080 (RDV63_05080)	pilC	1008646..1009875 (-)	1230	WP_313908423.1	type II secretion system F family protein	Machinery gene
RDV63_RS05085 (RDV63_05085)	pilB	1010044..1011738 (-)	1695	WP_313908424.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RDV63_RS05090 (RDV63_05090)	-	1012082..1012270 (-)	189	WP_313908425.1	hypothetical protein	-
RDV63_RS05095 (RDV63_05095)	-	1012260..1012733 (-)	474	WP_313908426.1	hypothetical protein	-
RDV63_RS05100 (RDV63_05100)	-	1012738..1013514 (-)	777	WP_313908427.1	hypothetical protein	-

Sequence

Protein

• Length: 300 a.a.
• Molecular weight: 32847.14 Da
• Isoelectric Point: 4.6009

>NTDB_id=884817 RDV63_RS05075 WP_313908422.1 1007744..1008646(-) (pilD) [Rheinheimera sp. MMS21-TC3]
MAELSLVLQQEPVLFIILVGLISLIVGSFLNVLIYRLPKMMELDWQAEYKAYFTQPAADDTSTGADTDEASFNLAVPRSC
CPNCQTPIKAYDNIPIVSWLLLKAKCRSCKAPISSRYPLIEGLTAVMAMLVAWQLGFGLTAMLLIVLTWGLIALSFIDID
KMLLPDQLTLPLLWLVLLFSLSDSALVSPSQAIIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAIFGALLGWQQLP
LIILLSSLVGAVVGITLLSIQGKDKTTPIPFGPYIAAAGWIAMLWGEQISQIYLNYIGVY

Nucleotide

• Length: 903 bp

>NTDB_id=884817 RDV63_RS05075 WP_313908422.1 1007744..1008646(-) (pilD) [Rheinheimera sp. MMS21-TC3]
ATGGCAGAGCTAAGCTTAGTGCTGCAACAAGAGCCCGTGCTGTTTATTATTCTAGTTGGCCTAATTAGCTTAATAGTAGG
CAGCTTTTTAAATGTGCTAATTTATCGTTTACCCAAAATGATGGAGCTAGACTGGCAAGCTGAGTATAAAGCCTATTTTA
CCCAACCTGCTGCTGATGATACTAGTACTGGTGCTGACACTGATGAAGCTAGCTTTAATTTAGCCGTACCGCGCTCATGC
TGCCCTAATTGCCAAACGCCGATTAAAGCTTATGACAATATTCCTATTGTAAGTTGGCTATTACTTAAGGCTAAATGCCG
CAGCTGTAAAGCGCCTATTAGTAGCCGTTATCCGCTTATTGAGGGCTTAACAGCAGTTATGGCCATGTTGGTAGCCTGGC
AACTAGGCTTTGGCTTAACTGCTATGCTGTTGATAGTGCTTACTTGGGGCCTAATTGCCTTAAGCTTTATTGATATTGAT
AAAATGCTCCTGCCCGATCAGCTAACTTTGCCTTTACTGTGGTTAGTACTGCTATTTAGCCTTAGCGACTCAGCTTTGGT
TAGCCCAAGCCAAGCCATTATAGGTGCAGCTGCAGGTTATTTAAGCTTATGGTCGGTGTATTGGCTGTTTAAATTATTAA
CCGGTAAAGAAGGTATGGGCTATGGCGACTTTAAATTACTGGCTATCTTTGGCGCCCTGTTAGGATGGCAGCAATTACCC
TTAATTATTTTACTATCTTCCTTGGTTGGTGCTGTAGTGGGCATAACCTTACTTAGCATTCAGGGTAAAGATAAAACTAC
CCCTATCCCCTTTGGCCCTTATATAGCAGCAGCGGGCTGGATTGCCATGCTGTGGGGCGAGCAAATAAGCCAAATATATT
TAAATTATATTGGGGTTTATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-134)

• Type IV leader peptidase family (Peptidase_A24) (145-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.69	94.667	0.537
pilD	Vibrio campbellii strain DS40M4	52.921	97	0.513
pilD	Acinetobacter baumannii D1279779	52.143	93.333	0.487
pilD	Acinetobacter nosocomialis M2	51.429	93.333	0.48
pilD	Neisseria gonorrhoeae MS11	49.621	88	0.437