Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RMQ62_RS05405 Genome accession   NZ_CP135065
Coordinates   1108470..1109651 (-) Length   393 a.a.
NCBI ID   WP_313680569.1    Uniprot ID   -
Organism   Streptococcus suis strain ID24665     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1103470..1114651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ62_RS05370 (RMQ62_05370) rplC 1104052..1104678 (-) 627 WP_205027589.1 50S ribosomal protein L3 -
  RMQ62_RS05375 (RMQ62_05375) rpsJ 1104775..1105083 (-) 309 WP_014735259.1 30S ribosomal protein S10 -
  RMQ62_RS05380 (RMQ62_05380) - 1105517..1105837 (-) 321 WP_002939343.1 DUF1292 domain-containing protein -
  RMQ62_RS05385 (RMQ62_05385) ruvX 1105849..1106268 (-) 420 WP_313680570.1 Holliday junction resolvase RuvX -
  RMQ62_RS05390 (RMQ62_05390) - 1106268..1106534 (-) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  RMQ62_RS05395 (RMQ62_05395) spx 1106634..1107032 (-) 399 WP_002939362.1 transcriptional regulator Spx -
  RMQ62_RS05400 (RMQ62_05400) recA 1107267..1108418 (-) 1152 WP_024388019.1 recombinase RecA Machinery gene
  RMQ62_RS05405 (RMQ62_05405) cinA 1108470..1109651 (-) 1182 WP_313680569.1 competence/damage-inducible protein A Machinery gene
  RMQ62_RS05410 (RMQ62_05410) - 1109688..1110257 (-) 570 WP_044673310.1 DNA-3-methyladenine glycosylase I -
  RMQ62_RS05415 (RMQ62_05415) ruvA 1110735..1111325 (-) 591 WP_024385072.1 Holliday junction branch migration protein RuvA -
  RMQ62_RS05420 (RMQ62_05420) mutL 1111364..1113301 (-) 1938 WP_313680568.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43074.17 Da        Isoelectric Point: 4.3458

>NTDB_id=884730 RMQ62_RS05405 WP_313680569.1 1108470..1109651(-) (cinA) [Streptococcus suis strain ID24665]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNEQRLLSVLEIASKRSDMVILCGGLGPTEDDLTKQT
LATFLQKELVVDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSWALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPFLTQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILQHDKLADYFYAYGEDNSLVKMVASCLIEKKQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGWLSEEA
DCIRQELQADLGLAVSVLIKPESTEDNVLAKVYLTLATTSGISKKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=884730 RMQ62_RS05405 WP_313680569.1 1108470..1109651(-) (cinA) [Streptococcus suis strain ID24665]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGCCAAATCGTTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAACAGCGACTATTGTCTGTACTTG
AAATTGCAAGTAAACGGAGTGATATGGTCATTTTATGTGGTGGTTTAGGTCCTACTGAAGACGACTTGACTAAGCAAACT
TTAGCGACATTTTTGCAAAAAGAGTTGGTTGTTGACGAACTAGCGATGGCAAAATTAGACCGTTTCTTTGCCAGTCGACC
AGGTCGTGTTCGCACACCTAATAATGAGCGTCAAGCGCAGATTGTGGAGGGAAGTTGGGCGCTACAGAACCCAGCAGGGT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTGACTTATATTGTTTTACCCGGACCACCAAGTGAACTCAAGGCTATG
TTTTCTGAGAGTTTGTTACCTTTTTTGACTCAATCTCAGCAGCAACTTTATTCGCGAGTCCTACGCTTTTTTGGCATTGG
TGAAAGCCAGTTGGTGACTGTTTTGGCGGACTTGATTGACAAGCAGACAGACCCAACTCTTGCACCCTATGCTAAGGTTG
GAGAGGTAACTTTACGCTTGTCCACCAAGGCGACCAGCCAAGAAGAAGCAAATCTACGTTTGAATCAGTTGGAAGAAGAA
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGTCAAAATGGTAGCGTCTTG
TTTGATAGAGAAAAAACAAACTATAGCCATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGTTTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGCGGGAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCTGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAACTGCAAGCTGATTTAGGTTTGGCTGTGTCTGTGCTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATATCTCACTTTGGCTACGACCTCGGGTATTTCCAAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

93.893

100

0.939
  cinA Streptococcus mitis SK321

56.25

100

0.595
  cinA Streptococcus pneumoniae TIGR4

56.01

100

0.593
  cinA Streptococcus mitis NCTC 12261

56.01

100

0.593
  cinA Streptococcus pneumoniae Rx1

56.01

100

0.593
  cinA Streptococcus pneumoniae R6

56.01

100

0.593
  cinA Streptococcus mutans UA159

56.448

100

0.59
  cinA Streptococcus pneumoniae D39

55.769

100

0.59
  cinA Bacillus subtilis subsp. subtilis str. 168

40.665

99.491

0.405