Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   RMQ63_RS06405 Genome accession   NZ_CP135063
Coordinates   1311912..1312949 (+) Length   345 a.a.
NCBI ID   WP_269472402.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1306912..1317949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS06390 (RMQ63_06390) - 1309612..1309986 (+) 375 WP_024385120.1 DUF1033 family protein -
  RMQ63_RS06395 (RMQ63_06395) - 1310014..1310964 (-) 951 WP_074391326.1 S66 peptidase family protein -
  RMQ63_RS06400 (RMQ63_06400) comYA 1311050..1312000 (+) 951 WP_074391327.1 competence type IV pilus ATPase ComGA Machinery gene
  RMQ63_RS06405 (RMQ63_06405) comYB 1311912..1312949 (+) 1038 WP_269472402.1 competence type IV pilus assembly protein ComGB Machinery gene
  RMQ63_RS06410 (RMQ63_06410) comYC 1312951..1313232 (+) 282 WP_074391328.1 competence type IV pilus major pilin ComGC Machinery gene
  RMQ63_RS06415 (RMQ63_06415) comGD 1313213..1313620 (+) 408 WP_074391329.1 competence type IV pilus minor pilin ComGD -
  RMQ63_RS06420 (RMQ63_06420) comYE 1313592..1313885 (+) 294 WP_024401507.1 competence type IV pilus minor pilin ComGE Machinery gene
  RMQ63_RS06425 (RMQ63_06425) comGF/cglF 1313872..1314306 (+) 435 WP_044762030.1 competence type IV pilus minor pilin ComGF Machinery gene
  RMQ63_RS06430 (RMQ63_06430) comGG 1314284..1314697 (+) 414 WP_074391330.1 competence type IV pilus minor pilin ComGG -
  RMQ63_RS06435 (RMQ63_06435) comYH 1314747..1315700 (+) 954 WP_024414316.1 class I SAM-dependent methyltransferase Machinery gene
  RMQ63_RS06440 (RMQ63_06440) - 1315750..1316937 (+) 1188 WP_044680792.1 acetate kinase -
  RMQ63_RS06445 (RMQ63_06445) - 1317254..1317805 (+) 552 WP_044680793.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39014.03 Da        Isoelectric Point: 9.3363

>NTDB_id=884686 RMQ63_RS06405 WP_269472402.1 1311912..1312949(+) (comYB) [Streptococcus suis strain ID32563]
MRKLIAFLQQDISVFGRQKQKKLPLDRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLKNVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNAATM
LINHLPTIFLSLCGLSLVAVLAGLVWFRKTNKIRVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGGELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=884686 RMQ63_RS06405 WP_269472402.1 1311912..1312949(+) (comYB) [Streptococcus suis strain ID32563]
ATGCGCAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCTTTGGATCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCTAGTGGTTTTCATTTGGGGGAAATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCAGACGGGCTGTTAGCAGGCAAACCCTTTTCAAGTTTGCTG
GCAGATTTGCGGTTTTCAGATGCGGTGGTCACGCAGGTGGCACTGGCAGAAGTTCATGGCAATACCAGCCTGAGTTTGAG
CCATATCCAGTCCTATTTGAAAAATGTCAGCAAGGTTCGTAAAAAACTGATTGAGGTGGCGACCTATCCGATTATCTTAC
TAGGTTTTCTGCTCTTGATTATGCTGGGTTTGAAAAATTACCTTCTGCCCCAGTTGGAGGAAGGCAATGCAGCGACTATG
CTAATTAACCATTTGCCGACCATCTTTTTATCCCTCTGTGGACTTAGTTTGGTGGCGGTCTTGGCTGGTCTTGTTTGGTT
TCGCAAAACCAACAAAATCAGGGTCTTTTCCTGCTTAGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGTTTGATGCAGGAG
CAGCAATCGCAGCTCTTTCGAGAGATTGGACAGGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGTTTTCACGAACACAT
TAAGACCTATGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGTCGAGTATGGTCAGGTCAAGTCCAAGTTGGGTGGCGAGT
TGACAGTCTATGCAGCCGAGTGCTGGGAGGACTTTTTCTCTCGGGTCAATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.45

99.13

0.629
  comGB/cglB Streptococcus mitis NCTC 12261

60.896

97.101

0.591
  comYB Streptococcus mutans UA140

59.184

99.42

0.588
  comYB Streptococcus mutans UA159

59.184

99.42

0.588
  comGB/cglB Streptococcus mitis SK321

60.597

97.101

0.588
  comGB/cglB Streptococcus pneumoniae Rx1

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae D39

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae R6

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae TIGR4

60

97.101

0.583
  comGB Lactococcus lactis subsp. cremoris KW2

50.742

97.681

0.496