Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   RMQ63_RS06420 Genome accession   NZ_CP135063
Coordinates   1313592..1313885 (+) Length   97 a.a.
NCBI ID   WP_024401507.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32563     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1308592..1318885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMQ63_RS06390 (RMQ63_06390) - 1309612..1309986 (+) 375 WP_024385120.1 DUF1033 family protein -
  RMQ63_RS06395 (RMQ63_06395) - 1310014..1310964 (-) 951 WP_074391326.1 S66 peptidase family protein -
  RMQ63_RS06400 (RMQ63_06400) comYA 1311050..1312000 (+) 951 WP_074391327.1 competence type IV pilus ATPase ComGA Machinery gene
  RMQ63_RS06405 (RMQ63_06405) comYB 1311912..1312949 (+) 1038 WP_269472402.1 competence type IV pilus assembly protein ComGB Machinery gene
  RMQ63_RS06410 (RMQ63_06410) comYC 1312951..1313232 (+) 282 WP_074391328.1 competence type IV pilus major pilin ComGC Machinery gene
  RMQ63_RS06415 (RMQ63_06415) comGD 1313213..1313620 (+) 408 WP_074391329.1 competence type IV pilus minor pilin ComGD -
  RMQ63_RS06420 (RMQ63_06420) comYE 1313592..1313885 (+) 294 WP_024401507.1 competence type IV pilus minor pilin ComGE Machinery gene
  RMQ63_RS06425 (RMQ63_06425) comGF/cglF 1313872..1314306 (+) 435 WP_044762030.1 competence type IV pilus minor pilin ComGF Machinery gene
  RMQ63_RS06430 (RMQ63_06430) comGG 1314284..1314697 (+) 414 WP_074391330.1 competence type IV pilus minor pilin ComGG -
  RMQ63_RS06435 (RMQ63_06435) comYH 1314747..1315700 (+) 954 WP_024414316.1 class I SAM-dependent methyltransferase Machinery gene
  RMQ63_RS06440 (RMQ63_06440) - 1315750..1316937 (+) 1188 WP_044680792.1 acetate kinase -
  RMQ63_RS06445 (RMQ63_06445) - 1317254..1317805 (+) 552 WP_044680793.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10799.68 Da        Isoelectric Point: 9.0978

>NTDB_id=884688 RMQ63_RS06420 WP_024401507.1 1313592..1313885(+) (comYE) [Streptococcus suis strain ID32563]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTEQDNLALNGVTVQVQRTAD
KIIVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=884688 RMQ63_RS06420 WP_024401507.1 1313592..1313885(+) (comYE) [Streptococcus suis strain ID32563]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACCCTAGTGACCAT
TTGCAGTTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGAGCAAGATAACTTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACAGCGGAT
AAGATCATTGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

54.639

100

0.546
  comYE Streptococcus mutans UA159

54.639

100

0.546
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371