Detailed information NTG0884689

Bioinformatically predicted

Overview

• Name: comGF/cglF
• Type: Machinery gene
• Locus tag: RMQ63_RS06425
• Genome accession: NZ_CP135063
• Coordinates: 1313872..1314306 (+)
• Length: 144 a.a.
• NCBI ID: WP_044762030.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ID32563
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1308872..1319306

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RMQ63_RS06390 (RMQ63_06390)	-	1309612..1309986 (+)	375	WP_024385120.1	DUF1033 family protein	-
RMQ63_RS06395 (RMQ63_06395)	-	1310014..1310964 (-)	951	WP_074391326.1	S66 peptidase family protein	-
RMQ63_RS06400 (RMQ63_06400)	comYA	1311050..1312000 (+)	951	WP_074391327.1	competence type IV pilus ATPase ComGA	Machinery gene
RMQ63_RS06405 (RMQ63_06405)	comYB	1311912..1312949 (+)	1038	WP_269472402.1	competence type IV pilus assembly protein ComGB	Machinery gene
RMQ63_RS06410 (RMQ63_06410)	comYC	1312951..1313232 (+)	282	WP_074391328.1	competence type IV pilus major pilin ComGC	Machinery gene
RMQ63_RS06415 (RMQ63_06415)	comGD	1313213..1313620 (+)	408	WP_074391329.1	competence type IV pilus minor pilin ComGD	-
RMQ63_RS06420 (RMQ63_06420)	comYE	1313592..1313885 (+)	294	WP_024401507.1	competence type IV pilus minor pilin ComGE	Machinery gene
RMQ63_RS06425 (RMQ63_06425)	comGF/cglF	1313872..1314306 (+)	435	WP_044762030.1	competence type IV pilus minor pilin ComGF	Machinery gene
RMQ63_RS06430 (RMQ63_06430)	comGG	1314284..1314697 (+)	414	WP_074391330.1	competence type IV pilus minor pilin ComGG	-
RMQ63_RS06435 (RMQ63_06435)	comYH	1314747..1315700 (+)	954	WP_024414316.1	class I SAM-dependent methyltransferase	Machinery gene
RMQ63_RS06440 (RMQ63_06440)	-	1315750..1316937 (+)	1188	WP_044680792.1	acetate kinase	-
RMQ63_RS06445 (RMQ63_06445)	-	1317254..1317805 (+)	552	WP_044680793.1	folate family ECF transporter S component	-
RMQ63_RS06450 (RMQ63_06450)	-	1317861..1319117 (+)	1257	WP_074391333.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16334.63 Da
• Isoelectric Point: 6.9822

>NTDB_id=884689 RMQ63_RS06425 WP_044762030.1 1313872..1314306(+) (comGF/cglF) [Streptococcus suis strain ID32563]
MLKSKIPAFTLLECLVALVILSGSLLVFEGLSKLLVQEAHYQGQTVQKEWLVFSSQLRSEWDQADLVKVENGKVYVDKGG
QALAFGKSRSDDFRKTNDRGQGYQPMLYQVDSAAISQENQLVRIDFSFKNGEERTFIYAFKEKS

Nucleotide

• Length: 435 bp

>NTDB_id=884689 RMQ63_RS06425 WP_044762030.1 1313872..1314306(+) (comGF/cglF) [Streptococcus suis strain ID32563]
TTGTTAAAAAGTAAAATTCCTGCTTTTACTCTCTTGGAATGCTTGGTAGCCTTAGTCATTCTTTCAGGTAGTCTTCTGGT
CTTTGAAGGCTTGTCAAAACTGCTGGTCCAAGAAGCGCATTATCAAGGTCAGACCGTTCAAAAGGAATGGTTGGTCTTCT
CTAGTCAATTGCGGTCGGAGTGGGATCAGGCTGACTTGGTCAAGGTTGAAAATGGCAAGGTCTATGTTGATAAGGGTGGT
CAGGCTTTGGCCTTTGGTAAGTCACGGTCGGATGATTTTCGGAAAACAAATGACAGGGGACAGGGCTACCAGCCCATGCT
CTATCAGGTGGACAGCGCAGCTATTTCCCAAGAAAACCAGCTGGTGCGCATCGACTTTAGTTTTAAAAACGGAGAGGAGC
GGACCTTTATCTATGCTTTTAAAGAAAAAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (37-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF/cglF	Streptococcus pneumoniae TIGR4	53.901	97.917	0.528
comGF/cglF	Streptococcus pneumoniae Rx1	53.901	97.917	0.528
comGF/cglF	Streptococcus pneumoniae D39	53.901	97.917	0.528
comGF/cglF	Streptococcus pneumoniae R6	53.901	97.917	0.528
comGF/cglF	Streptococcus mitis NCTC 12261	54.478	93.056	0.507
comYF	Streptococcus mutans UA140	50	100	0.5
comYF	Streptococcus mutans UA159	49.306	100	0.493
comGF/cglF	Streptococcus mitis SK321	51.493	93.056	0.479
comGF	Lactococcus lactis subsp. cremoris KW2	46.809	97.917	0.458