Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | ViNHUV68_RS09630 | Genome accession | NZ_CP134975 |
| Coordinates | 2131118..2131411 (-) | Length | 97 a.a. |
| NCBI ID | WP_391087725.1 | Uniprot ID | - |
| Organism | Vibrio sp. NH-UV-68 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2126118..2136411
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ViNHUV68_RS09605 (ViNHUV68_19370) | lapB | 2126411..2127580 (-) | 1170 | WP_038172928.1 | lipopolysaccharide assembly protein LapB | - |
| ViNHUV68_RS09610 (ViNHUV68_19380) | - | 2127609..2127887 (-) | 279 | WP_100752013.1 | LapA family protein | - |
| ViNHUV68_RS09615 (ViNHUV68_19390) | ihfB | 2128030..2128311 (-) | 282 | WP_038172930.1 | integration host factor subunit beta | - |
| ViNHUV68_RS09620 (ViNHUV68_19400) | rpsA | 2128523..2130193 (-) | 1671 | WP_038172931.1 | 30S ribosomal protein S1 | - |
| ViNHUV68_RS09625 (ViNHUV68_19410) | cmk | 2130296..2130976 (-) | 681 | WP_038172932.1 | (d)CMP kinase | - |
| ViNHUV68_RS09630 (ViNHUV68_19420) | comEA | 2131118..2131411 (-) | 294 | WP_391087725.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| ViNHUV68_RS09635 (ViNHUV68_19430) | ppiD | 2131551..2133407 (-) | 1857 | WP_391087728.1 | peptidylprolyl isomerase | - |
| ViNHUV68_RS09640 (ViNHUV68_19440) | - | 2133585..2133857 (-) | 273 | WP_038172935.1 | HU family DNA-binding protein | - |
| ViNHUV68_RS09645 (ViNHUV68_19450) | lon | 2134051..2136402 (-) | 2352 | WP_391087731.1 | endopeptidase La | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10650.26 Da Isoelectric Point: 5.0174
>NTDB_id=884388 ViNHUV68_RS09630 WP_391087725.1 2131118..2131411(-) (comEA) [Vibrio sp. NH-UV-68]
MMKTVLLAFVLFCVSPLSFSQQQDVDPKYDGIEITVNINQASAQELADLLKGIGLKKAQAIIDYRQHNGDFTSADALTAI
KGIGPSIVEKNRDRIEL
MMKTVLLAFVLFCVSPLSFSQQQDVDPKYDGIEITVNINQASAQELADLLKGIGLKKAQAIIDYRQHNGDFTSADALTAI
KGIGPSIVEKNRDRIEL
Nucleotide
Download Length: 294 bp
>NTDB_id=884388 ViNHUV68_RS09630 WP_391087725.1 2131118..2131411(-) (comEA) [Vibrio sp. NH-UV-68]
ATGATGAAAACCGTTTTGCTGGCTTTTGTTTTGTTCTGTGTCAGCCCGTTAAGCTTCTCGCAGCAGCAGGATGTAGACCC
AAAATATGATGGTATTGAAATCACGGTCAACATTAATCAAGCCAGTGCGCAAGAGTTAGCGGATCTGTTAAAGGGGATTG
GACTGAAAAAAGCGCAAGCGATTATCGACTATCGTCAGCACAATGGTGACTTTACCAGTGCTGATGCACTCACGGCGATA
AAAGGGATCGGTCCATCCATTGTTGAAAAAAATCGCGACCGGATTGAGCTATAA
ATGATGAAAACCGTTTTGCTGGCTTTTGTTTTGTTCTGTGTCAGCCCGTTAAGCTTCTCGCAGCAGCAGGATGTAGACCC
AAAATATGATGGTATTGAAATCACGGTCAACATTAATCAAGCCAGTGCGCAAGAGTTAGCGGATCTGTTAAAGGGGATTG
GACTGAAAAAAGCGCAAGCGATTATCGACTATCGTCAGCACAATGGTGACTTTACCAGTGCTGATGCACTCACGGCGATA
AAAGGGATCGGTCCATCCATTGTTGAAAAAAATCGCGACCGGATTGAGCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
54.348 |
94.845 |
0.515 |
| comEA | Vibrio cholerae C6706 |
53.763 |
95.876 |
0.515 |
| comEA | Vibrio cholerae strain A1552 |
53.763 |
95.876 |
0.515 |
| comEA | Vibrio campbellii strain DS40M4 |
51.087 |
94.845 |
0.485 |
| comE | Neisseria gonorrhoeae MS11 |
44.565 |
94.845 |
0.423 |
| comE | Neisseria gonorrhoeae MS11 |
44.565 |
94.845 |
0.423 |
| comE | Neisseria gonorrhoeae MS11 |
44.565 |
94.845 |
0.423 |
| comE | Neisseria gonorrhoeae MS11 |
44.565 |
94.845 |
0.423 |
| comEA | Legionella pneumophila strain ERS1305867 |
37.624 |
100 |
0.392 |
| comEA | Legionella pneumophila str. Paris |
37.624 |
100 |
0.392 |
| comEA | Acinetobacter baylyi ADP1 |
53.731 |
69.072 |
0.371 |