Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RI132_RS12100 Genome accession   NZ_CP134783
Coordinates   2632142..2633368 (+) Length   408 a.a.
NCBI ID   WP_047108818.1    Uniprot ID   -
Organism   Vibrio vulnificus strain GCU-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2627142..2638368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI132_RS12080 (RI132_12080) ampD 2628187..2628759 (-) 573 WP_047108812.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  RI132_RS12085 (RI132_12085) nadC 2628852..2629739 (+) 888 WP_047108814.1 carboxylating nicotinate-nucleotide diphosphorylase -
  RI132_RS12090 (RI132_12090) - 2629962..2630405 (+) 444 WP_013571141.1 pilin -
  RI132_RS12095 (RI132_12095) pilB 2630405..2632093 (+) 1689 WP_047108816.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RI132_RS12100 (RI132_12100) pilC 2632142..2633368 (+) 1227 WP_047108818.1 type II secretion system F family protein Machinery gene
  RI132_RS12105 (RI132_12105) pilD 2633462..2634331 (+) 870 WP_047108820.1 A24 family peptidase Machinery gene
  RI132_RS12110 (RI132_12110) coaE 2634333..2634941 (+) 609 WP_039554617.1 dephospho-CoA kinase -
  RI132_RS12115 (RI132_12115) zapD 2634974..2635714 (+) 741 WP_011079546.1 cell division protein ZapD -
  RI132_RS12120 (RI132_12120) yacG 2635777..2635971 (+) 195 WP_026060801.1 DNA gyrase inhibitor YacG -
  RI132_RS12125 (RI132_12125) rplS 2636227..2636580 (-) 354 WP_011079544.1 50S ribosomal protein L19 -
  RI132_RS12130 (RI132_12130) trmD 2636622..2637371 (-) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  RI132_RS12135 (RI132_12135) rimM 2637399..2637947 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  RI132_RS12140 (RI132_12140) rpsP 2637963..2638211 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45223.51 Da        Isoelectric Point: 10.3244

>NTDB_id=883732 RI132_RS12100 WP_047108818.1 2632142..2633368(+) (pilC) [Vibrio vulnificus strain GCU-01]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=883732 RI132_RS12100 WP_047108818.1 2632142..2633368(+) (pilC) [Vibrio vulnificus strain GCU-01]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAAAAATCTA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTACTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTTAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCGGGCACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGAGAA
AAAAATGAGCAGTTGCGAGCAAAAGTAATCAAGGCGCTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACTCAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGCGCTATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGTGG
GGTCTTATCCAAAGCGGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGTTTCAGTGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCTGCC
GGGATGCCAATGTACATCGCCATGCGCAACAGCCTTGCCTTCCCAGAATTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCGCCGCAATGTACCTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.5

98.039

0.77
  pilC Vibrio campbellii strain DS40M4

74.564

98.284

0.733
  pilC Pseudomonas stutzeri DSM 10701

41.337

99.02

0.409
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baumannii D1279779

39.756

100

0.4
  pilC Acinetobacter baylyi ADP1

40.602

97.794

0.397
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397