Detailed information NTG0883733

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RI132_RS12105
• Genome accession: NZ_CP134783
• Coordinates: 2633462..2634331 (+)
• Length: 289 a.a.
• NCBI ID: WP_047108820.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain GCU-01
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2628462..2639331

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RI132_RS12085 (RI132_12085)	nadC	2628852..2629739 (+)	888	WP_047108814.1	carboxylating nicotinate-nucleotide diphosphorylase	-
RI132_RS12090 (RI132_12090)	-	2629962..2630405 (+)	444	WP_013571141.1	pilin	-
RI132_RS12095 (RI132_12095)	pilB	2630405..2632093 (+)	1689	WP_047108816.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RI132_RS12100 (RI132_12100)	pilC	2632142..2633368 (+)	1227	WP_047108818.1	type II secretion system F family protein	Machinery gene
RI132_RS12105 (RI132_12105)	pilD	2633462..2634331 (+)	870	WP_047108820.1	A24 family peptidase	Machinery gene
RI132_RS12110 (RI132_12110)	coaE	2634333..2634941 (+)	609	WP_039554617.1	dephospho-CoA kinase	-
RI132_RS12115 (RI132_12115)	zapD	2634974..2635714 (+)	741	WP_011079546.1	cell division protein ZapD	-
RI132_RS12120 (RI132_12120)	yacG	2635777..2635971 (+)	195	WP_026060801.1	DNA gyrase inhibitor YacG	-
RI132_RS12125 (RI132_12125)	rplS	2636227..2636580 (-)	354	WP_011079544.1	50S ribosomal protein L19	-
RI132_RS12130 (RI132_12130)	trmD	2636622..2637371 (-)	750	WP_011079543.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
RI132_RS12135 (RI132_12135)	rimM	2637399..2637947 (-)	549	WP_011079542.1	ribosome maturation factor RimM	-
RI132_RS12140 (RI132_12140)	rpsP	2637963..2638211 (-)	249	WP_011079541.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32201.23 Da
• Isoelectric Point: 6.6172

>NTDB_id=883733 RI132_RS12105 WP_047108820.1 2633462..2634331(+) (pilD) [Vibrio vulnificus strain GCU-01]
MDALQYHPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYNITPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVLSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVTWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=883733 RI132_RS12105 WP_047108820.1 2633462..2634331(+) (pilD) [Vibrio vulnificus strain GCU-01]
ATGGACGCGTTACAATACCACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTGCCGAAAATAATGGAACTGGAATGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAACA
TCACACCACCGACAGAAACCCTAACATTAAGCACGCCGCGCTCAAGTTGCCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTGAGTTGGTTAGCACTAAGAGGAAAATGTCACCATTGCCAGACGAAAATTAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAGTCACTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACGCTGCCG
CTGACGTGGGCAGGCATCGCGCTAGCGTTACTAGAGATAAGTCCAGTATCTCTGCAAGATTCAGTGATCGGCGCGATGGC
TGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACGGGGAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTTTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAGCAAGGTATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATAGGGGCGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.736	99.654	0.765
pilD	Vibrio cholerae strain A1552	71.528	99.654	0.713
pilD	Acinetobacter nosocomialis M2	54.348	95.502	0.519
pilD	Acinetobacter baumannii D1279779	54.348	95.502	0.519
pilD	Neisseria gonorrhoeae MS11	47.636	95.156	0.453