Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RND59_RS05940 Genome accession   NZ_CP134780
Coordinates   1265513..1266670 (-) Length   385 a.a.
NCBI ID   WP_311846358.1    Uniprot ID   -
Organism   Vibrio ruber strain HNIBRBA4764     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1260513..1271670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RND59_RS05910 (RND59_05910) hemF 1261035..1261949 (-) 915 WP_077335588.1 oxygen-dependent coproporphyrinogen oxidase -
  RND59_RS05915 (RND59_05915) - 1261967..1262524 (-) 558 WP_077335586.1 L-threonylcarbamoyladenylate synthase -
  RND59_RS05920 (RND59_05920) purE 1262740..1263225 (+) 486 WP_077335584.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RND59_RS05925 (RND59_05925) - 1263231..1264361 (+) 1131 WP_077335582.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  RND59_RS05930 (RND59_05930) - 1264442..1265023 (-) 582 WP_077335580.1 type I DNA topoisomerase -
  RND59_RS05935 (RND59_05935) - 1265034..1265507 (-) 474 WP_027694359.1 DUF494 family protein -
  RND59_RS05940 (RND59_05940) dprA 1265513..1266670 (-) 1158 WP_311846358.1 DNA-processing protein DprA Machinery gene
  RND59_RS05945 (RND59_05945) def 1266847..1267368 (+) 522 WP_077335576.1 peptide deformylase -
  RND59_RS05950 (RND59_05950) fmt 1267380..1268345 (+) 966 WP_311846359.1 methionyl-tRNA formyltransferase -
  RND59_RS05955 (RND59_05955) rsmB 1268397..1269683 (+) 1287 WP_311846622.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  RND59_RS05960 (RND59_05960) trkA 1269763..1271139 (+) 1377 WP_077335572.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 41749.97 Da        Isoelectric Point: 6.8828

>NTDB_id=883663 RND59_RS05940 WP_311846358.1 1265513..1266670(-) (dprA) [Vibrio ruber strain HNIBRBA4764]
MHQSTSNVAENDRLSIWIKLSLTPRLGMQSLLKLLGKVSLEALSHYSAKEWLTVGLTPVQVSYLLSDAANQVAEDCLQWQ
IRGNHRYIVAYFSPDYPALLKEIPSPPPLLFVQGDPALLSVPQLAIVGSRYASMQGLQDAWHFANGIAQHQVAVTSGLAL
GIDGQAHQGALDGGGKTIAVLGAGLDRIYPARHQGLAERILEQQSGVLVSEFCPSTPPKATNFPRRNRIISGLSLGVLVI
EAAEKSGSLITARYAVEQNRDVFVIPGAIHQSGYRGSNALIRDGACLVQNIEQILSEVGTLSAWIKQEKPKEKIQQNELF
PPLIDDEELPFAEVLANVGVKATPVDILATRTHIPVHEVMRQLLELELSGHVIAVAGGYIRKGRG

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=883663 RND59_RS05940 WP_311846358.1 1265513..1266670(-) (dprA) [Vibrio ruber strain HNIBRBA4764]
ATGCATCAATCAACCTCTAATGTCGCTGAAAATGATCGATTATCGATCTGGATAAAGCTTAGCTTGACACCCCGTTTGGG
AATGCAATCGTTGCTAAAGCTGCTCGGGAAAGTATCGCTTGAGGCGTTATCTCATTATTCTGCAAAAGAGTGGCTTACTG
TCGGGCTCACACCGGTACAGGTCTCTTATCTGTTATCTGATGCAGCGAATCAGGTGGCTGAGGATTGCCTTCAATGGCAA
ATACGTGGCAATCATCGCTATATCGTGGCTTATTTTTCTCCGGATTATCCGGCGTTGCTGAAAGAAATTCCGTCTCCGCC
ACCGCTGCTGTTTGTGCAGGGAGATCCGGCGCTGTTGTCCGTCCCACAGCTTGCCATTGTGGGGAGTCGCTATGCCAGTA
TGCAAGGATTGCAAGATGCATGGCATTTTGCGAATGGTATTGCTCAGCATCAAGTGGCAGTGACCAGTGGATTAGCGTTG
GGAATTGATGGACAAGCCCATCAAGGCGCTTTAGATGGTGGCGGCAAAACCATTGCGGTTTTAGGCGCTGGTTTGGATCG
CATCTATCCGGCTCGGCATCAGGGGCTGGCTGAGCGAATACTTGAACAGCAATCCGGTGTGCTGGTGTCAGAATTTTGTC
CCTCAACGCCCCCGAAGGCAACGAACTTTCCTCGCCGAAACAGAATTATCAGTGGGTTATCTCTGGGAGTGCTGGTGATT
GAAGCTGCAGAAAAAAGCGGGTCATTAATTACGGCAAGATACGCTGTTGAGCAAAACCGGGATGTTTTTGTGATCCCGGG
CGCGATTCATCAGTCTGGTTATCGGGGAAGTAATGCACTAATTCGTGATGGCGCTTGCTTAGTTCAGAATATTGAACAGA
TACTCTCTGAAGTTGGTACGTTATCTGCTTGGATTAAGCAAGAGAAGCCAAAAGAGAAAATTCAGCAAAATGAGCTTTTT
CCGCCATTAATTGACGACGAAGAATTGCCATTTGCTGAAGTGTTAGCTAACGTAGGGGTAAAAGCGACACCAGTTGATAT
TCTTGCAACACGTACCCATATACCAGTTCATGAAGTGATGAGACAGCTCCTAGAGTTGGAATTATCCGGGCATGTGATTG
CAGTTGCTGGTGGCTACATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(321-378)

DNA recombination-mediator protein A (DNA_processg_A)

(87-289)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

57.029

97.922

0.558
  dprA Vibrio campbellii strain DS40M4

55.291

98.182

0.543
  dprA Glaesserella parasuis strain SC1401

44.142

95.325

0.421
  dprA Legionella pneumophila strain ERS1305867

43.396

96.364

0.418
  dprA Haemophilus influenzae Rd KW20

43.768

89.61

0.392
  dprA Neisseria gonorrhoeae MS11

35.294

100

0.374
  dprA Neisseria gonorrhoeae strain FA1090

35.049

100

0.371
  dprA Neisseria meningitidis strain C311

35.5

100

0.369
  dprA Neisseria meningitidis MC58

35.5

100

0.369