Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   RMA73_RS06810 Genome accession   NZ_CP134704
Coordinates   1460550..1461809 (+) Length   419 a.a.
NCBI ID   WP_058360089.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. translucens strain CO236     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1455550..1466809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMA73_RS06790 (RMA73_06815) - 1456438..1456620 (+) 183 WP_003477093.1 YhfG family protein -
  RMA73_RS06795 (RMA73_06820) - 1456617..1457234 (+) 618 WP_003477095.1 Fic family protein -
  RMA73_RS06800 (RMA73_06825) pilB 1457244..1458980 (-) 1737 WP_058360091.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RMA73_RS06805 (RMA73_06830) - 1459706..1460164 (-) 459 WP_058360090.1 pilin -
  RMA73_RS06810 (RMA73_06835) pilC 1460550..1461809 (+) 1260 WP_058360089.1 type II secretion system F family protein Machinery gene
  RMA73_RS06815 (RMA73_06840) - 1461816..1462679 (+) 864 WP_058360088.1 A24 family peptidase -
  RMA73_RS06820 (RMA73_06845) coaE 1462693..1463313 (+) 621 WP_261181052.1 dephospho-CoA kinase -
  RMA73_RS06825 (RMA73_06850) - 1463436..1464770 (-) 1335 WP_058360086.1 HAMP domain-containing sensor histidine kinase -
  RMA73_RS06830 (RMA73_06855) - 1464763..1465440 (-) 678 WP_003466405.1 response regulator transcription factor -
  RMA73_RS06835 (RMA73_06860) - 1465539..1465913 (-) 375 WP_311536974.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45508.62 Da        Isoelectric Point: 10.1825

>NTDB_id=883005 RMA73_RS06810 WP_058360089.1 1460550..1461809(+) (pilC) [Xanthomonas translucens pv. translucens strain CO236]
MSATRSAVSKEPVARNTSQQVPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGSAGSKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
LLIVLVGSIVGFVFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=883005 RMA73_RS06810 WP_058360089.1 1460550..1461809(+) (pilC) [Xanthomonas translucens pv. translucens strain CO236]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATACCAGCCAGCAGGTCCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACCCCGTCGGTGGTCAAGCCGAAACCCAAGCCCCTGTTCGGCTCCGCCGGCAGCAAGATCAGCGCGAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGATGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGTGTACTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAAGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCGGTCATGGCCGTGGCGCTTCTGGTCAGCTCGATCTTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCGGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTGGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCGTCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CCGGCTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAAAAG
GCCGTGCTGCGCATGCGCGACGACGTGTCGGTGGGCTACCCGGTCAATGTGGCGATGAAACAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTGGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Legionella pneumophila strain ERS1305867

51.733

96.42

0.499
  pilC Acinetobacter baylyi ADP1

50.735

97.375

0.494
  pilC Acinetobacter baumannii D1279779

50.245

97.375

0.489
  pilG Neisseria gonorrhoeae MS11

43.216

94.988

0.411
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria meningitidis 44/76-A

42.714

94.988

0.406
  pilC Vibrio campbellii strain DS40M4

40.05

94.749

0.379
  pilC Thermus thermophilus HB27

38.75

95.465

0.37