Detailed information NTG0881532

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: RKQ63_RS17330
• Genome accession: NZ_CP134565
• Coordinates: 3574197..3575423 (+)
• Length: 408 a.a.
• NCBI ID: WP_000279216.1
• Uniprot ID: A0A009IRK3
• Organism: Acinetobacter baumannii strain XH1039
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3572232..3573322	3574197..3575423	flank	875

Gene organization within MGE regions

Location: 3572232..3575423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RKQ63_RS17325 (RKQ63_17340)	-	3573394..3574167 (+)	774	Protein_3385	ATPase, T2SS/T4P/T4SS family	-
RKQ63_RS17330 (RKQ63_17345)	pilC	3574197..3575423 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 408 a.a.
• Molecular weight: 44936.43 Da
• Isoelectric Point: 9.9566

>NTDB_id=881532 RKQ63_RS17330 WP_000279216.1 3574197..3575423(+) (pilC) [Acinetobacter baumannii strain XH1039]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide

• Length: 1227 bp

>NTDB_id=881532 RKQ63_RS17330 WP_000279216.1 3574197..3575423(+) (pilC) [Acinetobacter baumannii strain XH1039]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTGACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAATTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACAGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCGATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (279-400)

• Type II secretion system (T2SS), protein F (T2SSF) (74-197)

3D structure

• AlphaFold DB: A0A009IRK3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Acinetobacter baumannii D1279779	99.755	100	0.998
pilC	Acinetobacter baylyi ADP1	86.029	100	0.86
pilC	Pseudomonas stutzeri DSM 10701	59.753	99.265	0.593
pilC	Legionella pneumophila strain ERS1305867	53.827	99.265	0.534
pilG	Neisseria gonorrhoeae MS11	47.236	97.549	0.461
pilG	Neisseria meningitidis 44/76-A	47.236	97.549	0.461
pilC	Vibrio cholerae strain A1552	42.647	100	0.426
pilC	Vibrio campbellii strain DS40M4	41.089	99.02	0.407
pilC	Thermus thermophilus HB27	36.658	98.284	0.36