Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   B0E36_RS21900 Genome accession   NZ_CP150879
Coordinates   5056709..5057416 (+) Length   235 a.a.
NCBI ID   WP_093589359.1    Uniprot ID   -
Organism   Streptomyces sp. MH191     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5051709..5062416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B0E36_RS21875 - 5053320..5053514 (+) 195 WP_006137348.1 hypothetical protein -
  B0E36_RS21890 tig 5054156..5055556 (+) 1401 WP_191853060.1 trigger factor -
  B0E36_RS21895 clpP 5055984..5056604 (+) 621 WP_006137351.1 ATP-dependent Clp protease proteolytic subunit Regulator
  B0E36_RS21900 clpP 5056709..5057416 (+) 708 WP_093589359.1 ATP-dependent Clp protease proteolytic subunit Regulator
  B0E36_RS21905 clpX 5057607..5058893 (+) 1287 WP_006137353.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  B0E36_RS21910 - 5058998..5059987 (-) 990 WP_234527307.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26100.63 Da        Isoelectric Point: 4.6619

>NTDB_id=880979 B0E36_RS21900 WP_093589359.1 5056709..5057416(+) (clpP) [Streptomyces sp. MH191]
MNDFPGRGIYDRLQATQAPQVAQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQ
LLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYS
ETGRGQVSDLEIAANEILRMRAQLEDLLAKHSTTPIEKIREDIERDKILTAEEALSYGLIDQIISTRKMNNDSVR

Nucleotide


Download         Length: 708 bp        

>NTDB_id=880979 B0E36_RS21900 WP_093589359.1 5056709..5057416(+) (clpP) [Streptomyces sp. MH191]
GTGAACGACTTCCCCGGCCGCGGCATCTACGACCGCCTGCAGGCCACCCAGGCCCCGCAGGTCGCTCAGGCCGAGTACAC
CGGCCCCCGCGCCGAGTCCCGTTACGTCATCCCCCGCTTCGTCGAGCGCACCTCCCAGGGCGTGCGCGAGTACGACCCGT
ACGCGAAGCTGTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAG
CTGCTGTGCCTGGAGTCGATGGACCCCGACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCCCT
CACGGCCATCTACGACACGATGCAGTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCG
CCATCCTGCTGGCCGCCGGAACCCCCGGCAAGCGGATGGCGCTGCCGAACGCCCGCGTGCTGATCCACCAGCCCTACAGC
GAGACCGGCCGCGGTCAGGTCTCGGACCTCGAGATCGCCGCCAACGAGATCCTCCGGATGCGCGCCCAGCTCGAGGACCT
GCTGGCCAAGCACTCGACCACGCCGATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGAGG
CCCTCTCCTACGGCCTGATCGACCAGATCATCTCCACCCGGAAGATGAACAACGACTCGGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(46-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

80.851

0.426
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.532

80

0.404
  clpP Lactococcus lactis subsp. cremoris KW2

45.05

85.957

0.387
  clpP Streptococcus mutans UA159

45.729

84.681

0.387
  clpP Streptococcus thermophilus LMD-9

46.667

82.979

0.387
  clpP Streptococcus thermophilus LMG 18311

46.667

82.979

0.387
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.059

85.957

0.379
  clpP Streptococcus pneumoniae R6

44.898

83.404

0.374
  clpP Streptococcus pneumoniae TIGR4

44.898

83.404

0.374
  clpP Streptococcus pneumoniae D39

44.898

83.404

0.374
  clpP Streptococcus pneumoniae Rx1

44.898

83.404

0.374
  clpP Streptococcus pyogenes JRS4

45.128

82.979

0.374
  clpP Streptococcus pyogenes MGAS315

45.128

82.979

0.374