Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   WMY90_RS03730 Genome accession   NZ_CP150875
Coordinates   721227..722897 (-) Length   556 a.a.
NCBI ID   WP_002953185.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TCI125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 716227..727897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WMY90_RS03695 (WMY90_03695) - 716269..716961 (-) 693 WP_011226119.1 phosphoglycerate mutase -
  WMY90_RS03700 (WMY90_03700) - 717216..718154 (+) 939 WP_002950994.1 dihydroorotate oxidase -
  WMY90_RS03705 (WMY90_03705) - 718219..718419 (-) 201 WP_022096741.1 hypothetical protein -
  WMY90_RS03710 (WMY90_03710) - 718478..718753 (-) 276 WP_002950996.1 HU family DNA-binding protein -
  WMY90_RS03715 (WMY90_03715) - 718890..719459 (-) 570 WP_011226122.1 YpmS family protein -
  WMY90_RS03720 (WMY90_03720) - 719452..720327 (-) 876 WP_022096740.1 SGNH/GDSL hydrolase family protein -
  WMY90_RS03725 (WMY90_03725) - 720320..721156 (-) 837 WP_022096739.1 DegV family protein -
  WMY90_RS03730 (WMY90_03730) recN 721227..722897 (-) 1671 WP_002953185.1 DNA repair protein RecN Machinery gene
  WMY90_RS03735 (WMY90_03735) - 722906..723352 (-) 447 WP_011226126.1 ArgR family transcriptional regulator -
  WMY90_RS03740 (WMY90_03740) - 723300..724166 (-) 867 WP_011226127.1 TlyA family RNA methyltransferase -
  WMY90_RS03745 (WMY90_03745) - 724159..725031 (-) 873 WP_022096738.1 polyprenyl synthetase family protein -
  WMY90_RS03750 (WMY90_03750) - 725031..725246 (-) 216 WP_002951008.1 exodeoxyribonuclease VII small subunit -
  WMY90_RS03755 (WMY90_03755) xseA 725224..726564 (-) 1341 WP_011227294.1 exodeoxyribonuclease VII large subunit -
  WMY90_RS03760 (WMY90_03760) - 726753..726998 (-) 246 WP_260214994.1 hypothetical protein -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62473.63 Da        Isoelectric Point: 4.5240

>NTDB_id=880848 WMY90_RS03730 WP_002953185.1 721227..722897(-) (recN) [Streptococcus thermophilus strain TCI125]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSAPKAEIQGFFSIEQNPALVSLL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTILKAVGNFLVDIHGQHDQEELMRPALHISMLDAFGDKDFFQAKKE
YQEYFDRYRELRKAVLEKQKNEKEHKARIEMLAFQIAEIEAASLKTGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSNNLSEAYYVLEDVTKQLGDLVDNLDFDAGRLQEIEYRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQRERHQIANALESEIKTELCDLYMDKADFKVVFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVEEIAKMLAGDNLTDAALSQARALLKVDEPV

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=880848 WMY90_RS03730 WP_002953185.1 721227..722897(-) (recN) [Streptococcus thermophilus strain TCI125]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAAATTTCTCTTAACTTTGAAAATGGGATGACTGTTCT
TACCGGAGAGACTGGGGCAGGAAAATCCATTATCATTGATGCCATGAATCTTATGTTGGGGGCACGGGCATCTAGCGAGG
TTGTCCGTCATTCAGCCCCCAAGGCGGAGATTCAGGGCTTCTTTTCAATTGAACAAAATCCTGCTTTAGTTAGTCTCTTG
GAAGACAATGGGATTCCTGTTGAAGATGAGTTAATTATCCGCCGTGAAATTTTCCAAAATGGTCGAAGTGTTAGCCGTAT
CAACGGTCAAATGGTCAATTTAACGATTCTTAAAGCTGTCGGCAACTTTTTGGTAGATATCCATGGACAGCATGACCAAG
AAGAACTTATGAGACCTGCTCTTCACATAAGCATGCTTGATGCCTTTGGTGACAAGGATTTTTTTCAGGCAAAAAAAGAA
TATCAGGAATACTTTGATCGTTACCGTGAGCTAAGAAAAGCTGTTCTTGAAAAACAGAAAAACGAGAAAGAGCATAAGGC
TAGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGCCTCTCTAAAAACAGGTGAGGATCTAGCTTTGATGA
AGGAGCGAGATAAACTCCTCAATCATAAGCAGATTGCTGATACCTTAACGAATGCTTATGTTATGCTGGATAATGAAGAT
TTTTCAAGCTTATCAAATGTCCGTTCTGCCATGAATGATCTCCAATCTCTTGAAGAGTATGATTCTGATTATAAAGAACT
CTCTAATAATTTGTCAGAAGCCTACTATGTCCTTGAGGATGTCACTAAACAGTTAGGAGATCTTGTAGATAATTTAGATT
TTGATGCTGGTCGTTTGCAAGAGATTGAATACCGTTTAGATACGATTAATGCCATTACTCGTAAATATGGTGGAACTGTT
GATGATGTCTTAGATTATCTCGAAAATTCAAGTAAAGAATATAACCTATTGACTGGAAATTCTAGCTCTTCTGATGCTAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGACTTACTCGCGTCTGCAGAAACCTTGCAAAGGGAACGACATCAGATTGCAA
ACGCTCTTGAGTCAGAGATAAAGACTGAGTTATGTGATTTGTATATGGATAAGGCTGATTTTAAAGTTGTCTTTACTAAG
GGGAAATTTAACCGTGATGGTAATGAGCAAGTTGAGTTTTATATTTCAACCAATCCAGGTGAAGGATTTAAACCGCTTGT
TAAGGTTGCATCTGGTGGCGAACTATCTCGACTTATGCTAGCCATTAAGTCCGCCTTTGCTCGAAAAGAAGATAAAACTA
GTATTGTCTTTGATGAGGTTGATACTGGAGTGTCGGGCCGCGTAGCCCAGGCTATCGCACAAAAGATTCATAAGATTGGA
AGTCATGGTCAGGTATTGGCTATCAGTCACCTTCCTCAAGTAATCGCTATTGCAGATTATCAATTCTTTATTTCTAAAGA
AAGTGATAACGAGACAACTGTATCTCGTGTTCGTCTCCTAACACCTGAAGAAAGAGTTGAGGAAATCGCCAAGATGCTTG
CAGGTGATAATTTGACTGATGCTGCCTTGAGTCAAGCTAGAGCTTTATTAAAAGTGGATGAACCTGTTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.014

100

0.45