Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RHP70_RS08805 Genome accession   NZ_CP134496
Coordinates   1749475..1750725 (+) Length   416 a.a.
NCBI ID   WP_149126644.1    Uniprot ID   A0A5C0WNI7
Organism   Bacillus sp. SG20001     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1744475..1755725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHP70_RS08780 (RHP70_08780) ymfI 1745896..1746624 (+) 729 WP_149126723.1 elongation factor P 5-aminopentanone reductase -
  RHP70_RS08785 (RHP70_08785) - 1746698..1746955 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  RHP70_RS08790 (RHP70_08790) - 1747087..1747878 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  RHP70_RS08795 (RHP70_08795) - 1747902..1748801 (+) 900 WP_064498480.1 helix-turn-helix domain-containing protein -
  RHP70_RS08800 (RHP70_08800) pgsA 1748877..1749458 (+) 582 WP_047202208.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RHP70_RS08805 (RHP70_08805) cinA 1749475..1750725 (+) 1251 WP_149126644.1 competence/damage-inducible protein A Machinery gene
  RHP70_RS08810 (RHP70_08810) recA 1750904..1751947 (+) 1044 WP_024424111.1 recombinase RecA Machinery gene
  RHP70_RS08815 (RHP70_08815) - 1752091..1753266 (+) 1176 WP_024424110.1 serine hydrolase -
  RHP70_RS08820 (RHP70_08820) rny 1753500..1755062 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45644.64 Da        Isoelectric Point: 4.7478

>NTDB_id=880489 RHP70_RS08805 WP_149126644.1 1749475..1750725(+) (cinA) [Bacillus sp. SG20001]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSIFNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=880489 RHP70_RS08805 WP_149126644.1 1749475..1750725(+) (cinA) [Bacillus sp. SG20001]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTCTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACAATTGCGAGTACGCTTGGTAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGCCGCGATATGTCACCGAACAATCGTAAGCAGGCACTCGTTCTAGAAGGATCAGATGTGCTCGTGAACC
GTTTCGGGATGGCTCCAGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAACTTGGCTTAAAGGAAAAGATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CCCCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTAGCGCGGGTAGGAGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGAGCACGGGAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTCAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAGCAGCAGGTACTTGGC
TGCCGGGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCGACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCAGGCATTCGAAAGCGC
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WNI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.663

99.76

0.755
  cinA Streptococcus mitis SK321

48.219

100

0.488
  cinA Streptococcus pneumoniae TIGR4

47.981

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.981

100

0.486
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.743

100

0.483
  cinA Streptococcus pneumoniae R6

47.743

100

0.483
  cinA Streptococcus pneumoniae D39

47.506

100

0.481
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394