Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RJW54_RS00395 Genome accession   NZ_CP134487
Coordinates   69382..70563 (+) Length   393 a.a.
NCBI ID   WP_172015543.1    Uniprot ID   -
Organism   Streptococcus suis strain MY1C3_3B     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 64382..75563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW54_RS00380 (RJW54_00380) mutL 65956..67893 (+) 1938 WP_004194473.1 DNA mismatch repair endonuclease MutL -
  RJW54_RS00385 (RJW54_00385) ruvA 67932..68522 (+) 591 WP_015646243.1 Holliday junction branch migration protein RuvA -
  RJW54_RS00390 (RJW54_00390) - 68776..69345 (+) 570 WP_024394300.1 DNA-3-methyladenine glycosylase I -
  RJW54_RS00395 (RJW54_00395) cinA 69382..70563 (+) 1182 WP_172015543.1 competence/damage-inducible protein A Machinery gene
  RJW54_RS00400 (RJW54_00400) recA 70615..71766 (+) 1152 WP_024387809.1 recombinase RecA Machinery gene
  RJW54_RS00405 (RJW54_00405) spx 72002..72400 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  RJW54_RS00410 (RJW54_00410) - 72500..72766 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  RJW54_RS00415 (RJW54_00415) ruvX 72766..73185 (+) 420 WP_032513707.1 Holliday junction resolvase RuvX -
  RJW54_RS00420 (RJW54_00420) - 73197..73517 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  RJW54_RS00425 (RJW54_00425) rpsJ 74055..74363 (+) 309 WP_014735259.1 30S ribosomal protein S10 -
  RJW54_RS00430 (RJW54_00430) rplC 74576..75202 (+) 627 WP_011921686.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43033.00 Da        Isoelectric Point: 4.4644

>NTDB_id=880241 RJW54_RS00395 WP_172015543.1 69382..70563(+) (cinA) [Streptococcus suis strain MY1C3_3B]
MKAELIAVGTEILTGQIINTNAQFLSEKCAELGIDVYFHTAVGDNEQRLLSVLEVAGKRSEIVILCGGLGPTEDDLTKQT
LAAFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEK
ILQHDKLREYFYAYGEENSLVQTVAERLVEKNKSIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGRLSEEA
DCIRQELQADLGLAVSVFIKPESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=880241 RJW54_RS00395 WP_172015543.1 69382..70563(+) (cinA) [Streptococcus suis strain MY1C3_3B]
ATGAAAGCAGAACTAATCGCTGTGGGTACAGAGATTTTGACAGGACAAATCATTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTACTTCCACACAGCTGTTGGAGATAATGAACAGAGGCTTTTGTCTGTACTGG
AGGTAGCCGGCAAGCGTAGTGAGATAGTTATTCTCTGTGGAGGACTGGGGCCAACAGAAGATGACTTGACTAAGCAGACC
TTGGCAGCCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTGTCCTACGTTTTTTTGGCATTGG
TGAAAGCCAGTTAGTGACTGTTTTGGCGGACTTGATTGACAAGCAGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAGGCAAATCTACGTTTGAATCAGTTGGAAGAAAAA
ATCTTACAACATGATAAACTGAGAGAATATTTCTATGCTTACGGTGAGGAAAATAGTCTGGTACAGACAGTAGCAGAGCG
ATTGGTGGAAAAGAATAAAAGCATAGCCATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGCCTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGAAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCAGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTGGGTTTGGCTGTGTCTGTGTTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATATCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

94.148

100

0.941
  cinA Streptococcus mitis SK321

56.01

100

0.593
  cinA Streptococcus pneumoniae TIGR4

56.01

100

0.593
  cinA Streptococcus pneumoniae Rx1

56.01

100

0.593
  cinA Streptococcus pneumoniae R6

56.01

100

0.593
  cinA Streptococcus mutans UA159

56.691

100

0.593
  cinA Streptococcus mitis NCTC 12261

55.769

100

0.59
  cinA Streptococcus pneumoniae D39

55.769

100

0.59
  cinA Bacillus subtilis subsp. subtilis str. 168

40.409

99.491

0.402