Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RJW49_RS00360 Genome accession   NZ_CP134477
Coordinates   65734..66915 (+) Length   393 a.a.
NCBI ID   WP_074393601.1    Uniprot ID   -
Organism   Streptococcus suis strain NLS40     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 60734..71915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJW49_RS00345 (RJW49_00345) mutL 62188..64125 (+) 1938 WP_014735250.1 DNA mismatch repair endonuclease MutL -
  RJW49_RS00350 (RJW49_00350) ruvA 64164..64754 (+) 591 WP_014735251.1 Holliday junction branch migration protein RuvA -
  RJW49_RS00355 (RJW49_00355) - 65128..65697 (+) 570 WP_014735252.1 DNA-3-methyladenine glycosylase I -
  RJW49_RS00360 (RJW49_00360) cinA 65734..66915 (+) 1182 WP_074393601.1 competence/damage-inducible protein A Machinery gene
  RJW49_RS00365 (RJW49_00365) recA 66967..68118 (+) 1152 WP_024387809.1 recombinase RecA Machinery gene
  RJW49_RS00370 (RJW49_00370) spx 68354..68752 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  RJW49_RS00375 (RJW49_00375) - 68852..69118 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  RJW49_RS00380 (RJW49_00380) ruvX 69118..69537 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  RJW49_RS00385 (RJW49_00385) - 69549..69869 (+) 321 WP_014735256.1 DUF1292 domain-containing protein -
  RJW49_RS00390 (RJW49_00390) - 70026..70562 (+) 537 WP_050572628.1 nucleotidyltransferase family protein -
  RJW49_RS00395 (RJW49_00395) - 70696..71604 (+) 909 WP_014735258.1 IS982 family transposase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42952.73 Da        Isoelectric Point: 4.3159

>NTDB_id=880190 RJW49_RS00360 WP_074393601.1 65734..66915(+) (cinA) [Streptococcus suis strain NLS40]
MKAELIAVGTEILTGQIINTNAQFLSEKCAELGIDVYFHTAVGDNENRLLSVLEVASQRSDLVILCGGLGPTEDDLTKQT
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTSNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILQHDKLREYFYAYGEENSLVQTVAERLVEKNKSIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGSLSEEA
DCIRQELQADLGLAVSVLIKPESTEDNVLAKVYLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=880190 RJW49_RS00360 WP_074393601.1 65734..66915(+) (cinA) [Streptococcus suis strain NLS40]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGTCAAATCATTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAAAACAGGCTTCTGTCTGTACTGG
AAGTAGCCAGTCAGCGGAGCGACTTGGTCATTCTCTGTGGAGGACTTGGTCCAACTGAGGATGACTTGACCAAGCAGACC
CTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACATCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTGTCCTACGTTTTTTTGGTATTGG
TGAAAGCCAGTTAGTGACTGTTTTGGCGGACTTGATTGACAAGCAGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAGGCAAATCTACGTTTGAATCAGTTGGAAGAAGAA
ATCTTACAACATGATAAACTGAGAGAATATTTCTATGCCTACGGTGAGGAAAATAGTCTGGTACAGACAGTAGCAGAGCG
ATTGGTGGAAAAGAATAAAAGCATAGCCATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGCCTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGAAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCAGCCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTGGGTTTGGCTGTGTCTGTGCTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATATCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

94.402

100

0.944
  cinA Streptococcus pneumoniae Rx1

56.49

100

0.598
  cinA Streptococcus pneumoniae R6

56.49

100

0.598
  cinA Streptococcus mitis SK321

56.49

100

0.598
  cinA Streptococcus pneumoniae TIGR4

56.49

100

0.598
  cinA Streptococcus mitis NCTC 12261

56.25

100

0.595
  cinA Streptococcus pneumoniae D39

56.25

100

0.595
  cinA Streptococcus mutans UA159

56.691

100

0.593
  cinA Bacillus subtilis subsp. subtilis str. 168

40.409

99.491

0.402