Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RJT46_RS09920 Genome accession   NZ_CP134463
Coordinates   2015599..2016867 (+) Length   422 a.a.
NCBI ID   WP_311082762.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain B8-12     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2010599..2021867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJT46_RS09890 - 2011450..2011704 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  RJT46_RS09895 - 2011932..2012705 (+) 774 WP_250244779.1 DUF3388 domain-containing protein -
  RJT46_RS09900 - 2012728..2013819 (+) 1092 WP_311082758.1 RodZ domain-containing protein -
  RJT46_RS09905 - 2013904..2014068 (+) 165 WP_023988236.1 hypothetical protein -
  RJT46_RS09910 - 2014214..2014705 (+) 492 WP_311082760.1 YajQ family cyclic di-GMP-binding protein -
  RJT46_RS09915 pgsA 2014916..2015503 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RJT46_RS09920 cinA 2015599..2016867 (+) 1269 WP_311082762.1 competence/damage-inducible protein A Machinery gene
  RJT46_RS09925 recA 2017110..2018171 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  RJT46_RS09930 - 2018368..2019120 (+) 753 WP_311082764.1 RecX family transcriptional regulator -
  RJT46_RS09935 rny 2019496..2021040 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46305.19 Da        Isoelectric Point: 4.7215

>NTDB_id=880027 RJT46_RS09920 WP_311082762.1 2015599..2016867(+) (cinA) [Paenibacillus polymyxa strain B8-12]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNINRLQEAIRIAQKRADIILFSGGLGPTQDDLTKEA
IAAVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANHAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVTLEKVIVDLMANRGLTVSAAESCTGGMLMEHLTSVPGSATMFQGGIVCYSNEMKMKLLNVP
CDYLEGDQAPGAVSEEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=880027 RJT46_RS09920 WP_311082762.1 2015599..2016867(+) (cinA) [Paenibacillus polymyxa strain B8-12]
ATGAAAGCTGAAATAATTGCAGTAGGAACAGAGTTATTGCTCGGACAAATTGTGAATACAAATGCTCAATATTTGTCACA
AGAGCTGGCTACAATTGGAATCGATGTATATTTTCAGACTGTGGTTGGCGATAACATAAATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGCGGTCTGGGGCCGACTCAGGATGATTTGACGAAAGAGGCG
ATAGCGGCTGTATTGGGGCGGAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAATTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGTGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCGATTGCACAGGACGGTAAATTTTATGTAGTTTTACCTGGACCGCCTAAGGAACTCAAGCCCATGTTT
GCAAACCATGCGAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCGAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATCTGATTCAATCCCAGACAGATCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTAATTAAGCTGACAGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAGTATATGTATGCAAGCGAGGATGTTACGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAATCGCGGACTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACACCTCACTTCTG
TACCTGGCAGTGCTACTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAAATGAAATTACTCAACGTGCCT
TGTGATTATTTGGAAGGGGATCAAGCGCCAGGTGCAGTGAGTGAGGAAGTGGCTCTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGACAGCGATTTTGGACTTTCAGTTACTGGTGTAGCCGGGCCTGGATATTCCGAACGGAAGCCAGTCGGTCTAG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGCAACCGTGAAACAATCCGA
CTGCGATCAGTCAAAGCAATCCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus mitis NCTC 12261

49.756

97.156

0.483
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

49.01

95.735

0.469
  cinA Streptococcus mutans UA159

46.118

100

0.464
  cinA Streptococcus suis isolate S10

45.431

90.758

0.412