Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RJD40_RS00235 Genome accession   NZ_CP134280
Coordinates   58243..59382 (+) Length   379 a.a.
NCBI ID   WP_418113691.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0106     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 53243..64382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD40_RS00215 (RJD40_00215) rsmB 54230..55510 (-) 1281 WP_418113689.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  RJD40_RS00220 (RJD40_00220) fmt 55649..56596 (-) 948 WP_005597351.1 methionyl-tRNA formyltransferase -
  RJD40_RS00225 (RJD40_00225) def 56615..57124 (-) 510 WP_005597353.1 peptide deformylase -
  RJD40_RS00230 (RJD40_00230) - 57295..58239 (+) 945 WP_418113690.1 peptidoglycan-binding protein LysM -
  RJD40_RS00235 (RJD40_00235) dprA 58243..59382 (+) 1140 WP_418113691.1 DNA-processing protein DprA Machinery gene
  RJD40_RS00240 (RJD40_00240) - 59379..59855 (+) 477 WP_005597359.1 DUF494 family protein -
  RJD40_RS00245 (RJD40_00245) - 59977..60555 (+) 579 WP_005597361.1 type I DNA topoisomerase -
  RJD40_RS00250 (RJD40_00250) - 60609..61751 (-) 1143 WP_418113692.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  RJD40_RS00255 (RJD40_00255) purE 61755..62240 (-) 486 WP_418113693.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RJD40_RS00260 (RJD40_00260) - 62436..62993 (+) 558 WP_418113694.1 L-threonylcarbamoyladenylate synthase -
  RJD40_RS00265 (RJD40_00265) hemF 63055..63975 (+) 921 WP_065545882.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 41194.65 Da        Isoelectric Point: 8.4819

>NTDB_id=879622 RJD40_RS00235 WP_418113691.1 58243..59382(+) (dprA) [Vibrio scophthalmi strain 21FBVib0106]
MILESNESDLDLIAWLTLYFTPRLGPKGMSKLLSKASATQLVTYDRSQLLALGLTEAQVRSIQQPNQLYLMQCLEWLHAS
TEHHIITLQSESYPPLLKQISAPPAVLFVNGDLNALHQPQIALVGSRHASIDGLNNAKHFAAALVQHGLVVTSGLALGID
GYAHDGALTAKGKTIAVLGCGLEHVYPARHRKLAARVVKNGALVSEFHPRTLPKASNFPRRNRIISGLSLGVLVVEAAEK
SGSLITARYAAEQGREVFAIPGSIQVPQARGCNSLIQQGACLVQSEQDVLNEIDTLLRWSNINKPLMQIEHSLEKEQKEQ
LPFAKLLANVGAEVTPVDILAQRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRGKL

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=879622 RJD40_RS00235 WP_418113691.1 58243..59382(+) (dprA) [Vibrio scophthalmi strain 21FBVib0106]
ATGATTTTAGAGAGTAATGAGTCTGATCTCGACCTTATCGCGTGGCTGACGCTTTACTTCACCCCAAGGCTTGGGCCGAA
AGGGATGAGTAAGCTACTTAGCAAGGCATCCGCAACGCAGTTAGTCACTTATGATCGGTCACAACTTTTGGCGCTCGGCT
TAACTGAAGCACAAGTGAGGTCAATTCAACAGCCGAATCAGCTTTATTTAATGCAATGTTTAGAGTGGCTGCATGCATCG
ACAGAGCACCATATTATCACGTTGCAGTCGGAGTCTTATCCGCCGCTATTGAAACAAATTTCTGCGCCGCCGGCAGTATT
GTTTGTTAACGGTGATTTGAATGCATTACATCAGCCACAAATTGCCTTGGTCGGCAGTCGCCATGCCTCGATTGATGGTT
TAAACAACGCCAAGCACTTCGCTGCCGCATTGGTTCAGCATGGTTTGGTGGTCACCAGCGGCTTGGCGCTAGGTATTGAT
GGTTATGCGCATGATGGGGCTCTAACGGCGAAAGGAAAAACCATCGCAGTACTGGGTTGTGGTCTTGAGCATGTTTATCC
TGCTCGCCATCGAAAACTCGCAGCACGAGTGGTGAAAAATGGCGCTTTGGTATCGGAGTTTCACCCTCGAACGTTGCCGA
AAGCGAGTAACTTTCCGCGCCGTAATCGCATTATTAGCGGTTTGTCGTTGGGCGTCTTGGTTGTGGAAGCGGCGGAAAAA
AGCGGTTCTCTGATCACCGCGCGCTATGCTGCAGAGCAAGGTCGAGAAGTTTTTGCTATTCCAGGCTCTATTCAAGTGCC
ACAAGCGAGAGGTTGTAACAGCCTGATCCAGCAAGGGGCGTGCTTAGTACAAAGTGAACAAGATGTGTTAAATGAAATAG
ATACACTGTTGCGCTGGTCTAATATTAATAAGCCTTTAATGCAAATTGAGCATAGCTTGGAAAAAGAGCAGAAAGAACAA
TTGCCATTTGCCAAGCTGTTAGCTAACGTAGGAGCCGAAGTAACACCTGTTGATATTCTGGCACAAAGGACCAATATCCC
TGTGCAAGAGGTAATGATGCAGCTCTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGTA
AGGGGAGGGGCAAGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-284)

DprA winged helix domain (DprA_WH)

(324-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

66.307

97.889

0.649
  dprA Vibrio cholerae strain A1552

58.808

97.361

0.573
  dprA Glaesserella parasuis strain SC1401

46.883

97.361

0.456
  dprA Legionella pneumophila strain ERS1305867

45.73

95.778

0.438
  dprA Neisseria meningitidis strain C311

39.386

100

0.406
  dprA Neisseria meningitidis MC58

39.386

100

0.406
  dprA Neisseria gonorrhoeae MS11

37.532

100

0.385
  dprA Neisseria gonorrhoeae strain FA1090

37.275

100

0.383
  dprA Haemophilus influenzae Rd KW20

50.362

72.823

0.367