Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RJD39_RS12925 Genome accession   NZ_CP134277
Coordinates   2761929..2763068 (+) Length   379 a.a.
NCBI ID   WP_406732357.1    Uniprot ID   -
Organism   Vibrio scophthalmi strain 21FBVib0096     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2756929..2768068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RJD39_RS12905 (RJD39_12880) rsmB 2757916..2759196 (-) 1281 WP_406732354.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  RJD39_RS12910 (RJD39_12885) fmt 2759335..2760282 (-) 948 WP_005597351.1 methionyl-tRNA formyltransferase -
  RJD39_RS12915 (RJD39_12890) def 2760301..2760810 (-) 510 WP_005597353.1 peptide deformylase -
  RJD39_RS12920 (RJD39_12895) - 2760981..2761925 (+) 945 WP_406732355.1 peptidoglycan-binding protein LysM -
  RJD39_RS12925 (RJD39_12900) dprA 2761929..2763068 (+) 1140 WP_406732357.1 DNA-processing protein DprA Machinery gene
  RJD39_RS12930 (RJD39_12905) - 2763065..2763541 (+) 477 WP_406732358.1 DUF494 family protein -
  RJD39_RS12935 (RJD39_12910) - 2763663..2764241 (+) 579 WP_406732360.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  RJD39_RS12940 (RJD39_12915) - 2764296..2765438 (-) 1143 WP_406732361.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  RJD39_RS12945 (RJD39_12920) purE 2765442..2765927 (-) 486 WP_005597378.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RJD39_RS12950 (RJD39_12925) - 2766123..2766680 (+) 558 WP_009386325.1 L-threonylcarbamoyladenylate synthase -
  RJD39_RS12955 (RJD39_12930) hemF 2766742..2767662 (+) 921 WP_406732363.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 41181.65 Da        Isoelectric Point: 8.4788

>NTDB_id=879608 RJD39_RS12925 WP_406732357.1 2761929..2763068(+) (dprA) [Vibrio scophthalmi strain 21FBVib0096]
MILESNESDLDLIAWLTLYFTPRLGPKGMSKLLSKASATQLVTYERSQLLALGLTEAQVRAIQQPNQLYLMQCLEWLHSS
TEHHIITLQSEAYPPLLKQISAPPAVLFVKGDLNALHQPQIALVGSRHASIDGLNNAKHFAAALVQHGLVVTSGLALGID
GYAHDGALTAKGKTIAVLGCGLEHVYPARHRKLAARVVQNGALVSEFHPRTLPKANNFPRRNRIISGLSLGVLVVEAAEK
SGSLITARYAAEQGREVFAIPGSIQVPQARGCNSLIQQGACLVQSEQDVLNEIDTLLRWSNINKPLMQTEPSLEKEQKEQ
LPFAKLLANVGAEVTPVDILAQRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRGKL

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=879608 RJD39_RS12925 WP_406732357.1 2761929..2763068(+) (dprA) [Vibrio scophthalmi strain 21FBVib0096]
ATGATTTTAGAGAGTAATGAGTCTGATCTCGACCTTATCGCGTGGCTGACACTTTACTTCACCCCAAGGCTCGGGCCCAA
AGGGATGAGTAAGCTACTTAGCAAGGCATCCGCAACGCAGTTAGTCACTTATGAACGGTCGCAACTGTTGGCGCTCGGCT
TAACTGAAGCACAAGTGAGGGCAATTCAACAGCCGAATCAGCTTTATTTAATGCAATGTTTAGAGTGGCTGCATTCATCG
ACAGAGCACCATATTATCACGTTGCAGTCGGAGGCTTACCCGCCGCTATTGAAACAGATTTCTGCACCACCGGCAGTATT
GTTTGTTAAAGGTGATTTGAATGCATTACATCAGCCACAAATTGCCTTGGTCGGCAGTCGTCATGCCTCGATTGATGGTT
TAAACAACGCCAAACACTTCGCTGCCGCATTGGTTCAGCATGGTTTGGTGGTCACCAGCGGCTTGGCGCTAGGTATTGAT
GGTTATGCGCATGATGGGGCTCTAACGGCGAAAGGTAAAACCATCGCAGTACTGGGTTGTGGTCTTGAGCATGTTTATCC
CGCTCGCCATCGAAAACTCGCAGCACGAGTGGTGCAAAATGGCGCTTTGGTATCGGAGTTTCACCCTCGCACGTTGCCGA
AAGCGAACAACTTTCCGCGCCGTAATCGCATTATTAGTGGTTTGTCGTTGGGCGTCTTGGTTGTGGAAGCGGCGGAAAAA
AGTGGCTCTCTGATCACCGCGCGTTATGCTGCAGAGCAAGGTCGAGAAGTTTTTGCTATTCCTGGCTCTATTCAAGTGCC
CCAAGCGAGAGGTTGTAACAGCCTGATCCAGCAAGGGGCGTGCTTAGTACAAAGTGAACAAGATGTGTTAAATGAAATAG
ATACACTGTTGCGCTGGTCTAATATTAATAAGCCTTTAATGCAAACTGAGCCTAGCTTGGAAAAAGAGCAGAAAGAACAA
TTGCCATTTGCCAAGCTGTTAGCTAACGTAGGAGCCGAAGTAACACCTGTTGATATTCTGGCACAGAGGACCAATATCCC
AGTGCAAGAGGTCATGATGCAGCTCTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGTA
AGGGGAGGGGCAAGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-284)

DprA winged helix domain (DprA_WH)

(323-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

66.577

97.889

0.652
  dprA Vibrio cholerae strain A1552

58.537

97.361

0.57
  dprA Glaesserella parasuis strain SC1401

47.154

97.361

0.459
  dprA Legionella pneumophila strain ERS1305867

46.797

94.723

0.443
  dprA Neisseria meningitidis MC58

39.642

100

0.409
  dprA Neisseria meningitidis strain C311

39.642

100

0.409
  dprA Haemophilus influenzae Rd KW20

44.97

89.182

0.401
  dprA Neisseria gonorrhoeae MS11

38.046

100

0.39
  dprA Neisseria gonorrhoeae strain FA1090

37.789

100

0.388