Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RDV49_RS04110 Genome accession   NZ_CP133988
Coordinates   873113..873610 (+) Length   165 a.a.
NCBI ID   WP_003008622.1    Uniprot ID   V8BCW4
Organism   Streptococcus parasanguinis strain B-1756     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 868113..878610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV49_RS04090 (RDV49_04090) - 870169..870576 (-) 408 WP_003008629.1 hypothetical protein -
  RDV49_RS04095 (RDV49_04095) - 870557..871459 (-) 903 WP_003008628.1 phosphodiester glycosidase family protein -
  RDV49_RS04100 (RDV49_04100) - 871446..872498 (-) 1053 WP_003008625.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  RDV49_RS04105 (RDV49_04105) rpsF 872802..873092 (+) 291 WP_003005040.1 30S ribosomal protein S6 -
  RDV49_RS04110 (RDV49_04110) ssbA 873113..873610 (+) 498 WP_003008622.1 single-stranded DNA-binding protein Machinery gene
  RDV49_RS04115 (RDV49_04115) rpsR 873652..873891 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  RDV49_RS04120 (RDV49_04120) - 874149..874670 (+) 522 WP_003008620.1 GNAT family N-acetyltransferase -
  RDV49_RS04125 (RDV49_04125) - 874705..875382 (-) 678 WP_003008618.1 DUF1129 domain-containing protein -
  RDV49_RS04130 (RDV49_04130) - 875410..876354 (-) 945 WP_003005422.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17919.68 Da        Isoelectric Point: 4.9371

>NTDB_id=878160 RDV49_RS04110 WP_003008622.1 873113..873610(+) (ssbA) [Streptococcus parasanguinis strain B-1756]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRAAREGHAGGGYSSGNGGFAGNATPSFGGSEPSNAAPNFGREENPFGANPMDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=878160 RDV49_RS04110 WP_003008622.1 873113..873610(+) (ssbA) [Streptococcus parasanguinis strain B-1756]
ATGATTAACAATGTTGTACTTGTCGGTCGTATGACCCGTGATGCTGAACTTCGCTACACTCCAAGCAATCAAGCAGTTGC
TACATTCAGCCTAGCTGTCAACCGCAACTTCAAGAGTCAAAATGGAGAGCGCGAAGCCGATTTCATCAACTGTGTGATCT
GGCGTCAGCAAGCAGAAAACTTAGCCAACTGGGCTAAGAAAGGTGCTTTGATTGGGATTACCGGTCGCATTCAAACACGT
AATTACGAAAACCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCAGACAGCTTCCAACTATTGGAAAGCCGTGC
AGCACGCGAAGGGCATGCAGGTGGTGGCTATTCATCAGGCAACGGTGGTTTTGCTGGAAATGCAACCCCAAGCTTTGGTG
GATCTGAACCAAGCAATGCAGCGCCAAACTTTGGTCGTGAAGAAAATCCATTTGGAGCGAATCCAATGGATATCTCAGAC
GACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8BCW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.857

100

0.624
  ssb Latilactobacillus sakei subsp. sakei 23K

58.824

100

0.606
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.137

70.909

0.37
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.061

0.364
  ssbB/cilA Streptococcus pneumoniae R6

51.282

70.909

0.364
  ssbB/cilA Streptococcus mitis SK321

51.282

70.909

0.364
  ssbB/cilA Streptococcus mitis NCTC 12261

51.282

70.909

0.364
  ssbB/cilA Streptococcus pneumoniae Rx1

51.282

70.909

0.364
  ssbB/cilA Streptococcus pneumoniae D39

51.282

70.909

0.364