Detailed information NTG0877741

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: RIM63_RS00715
• Genome accession: NZ_CP133952
• Coordinates: 126432..127466 (+)
• Length: 344 a.a.
• NCBI ID: WP_249093266.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain HT321
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 121432..132466

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RIM63_RS00700 (RIM63_00700)	-	122728..124731 (+)	2004	WP_317584300.1	DUF1430 domain-containing protein	-
RIM63_RS00705 (RIM63_00705)	-	124733..125380 (+)	648	WP_317584302.1	ABC transporter ATP-binding protein	-
RIM63_RS00710 (RIM63_00710)	comGA/cglA	125561..126499 (+)	939	WP_206158897.1	competence type IV pilus ATPase ComGA	Machinery gene
RIM63_RS00715 (RIM63_00715)	comYB	126432..127466 (+)	1035	WP_249093266.1	competence type IV pilus assembly protein ComGB	Machinery gene
RIM63_RS00720 (RIM63_00720)	comGC/cglC	127467..127790 (+)	324	WP_014622142.1	competence type IV pilus major pilin ComGC	Machinery gene
RIM63_RS00725 (RIM63_00725)	comGD	127768..128193 (+)	426	WP_317585222.1	competence type IV pilus minor pilin ComGD	-
RIM63_RS00730 (RIM63_00730)	comGE	128198..128440 (+)	243	WP_012677236.1	competence type IV pilus minor pilin ComGE	-
RIM63_RS00735 (RIM63_00735)	comYF	128427..128861 (+)	435	WP_012677237.1	competence type IV pilus minor pilin ComGF	Machinery gene
RIM63_RS00740 (RIM63_00740)	comGG	128839..129201 (+)	363	WP_206152302.1	competence type IV pilus minor pilin ComGG	-
RIM63_RS00745 (RIM63_00745)	comYH	129263..130216 (+)	954	WP_037580627.1	class I SAM-dependent methyltransferase	Machinery gene
RIM63_RS00750 (RIM63_00750)	-	130276..131475 (+)	1200	WP_012678817.1	acetate kinase	-
RIM63_RS00755 (RIM63_00755)	-	131844..132458 (-)	615	WP_317584310.1	hypothetical protein	-

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39382.58 Da
• Isoelectric Point: 9.4455

>NTDB_id=877741 RIM63_RS00715 WP_249093266.1 126432..127466(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain HT321]
MISFLQRDISIAGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNALTDLLL
HLPHYFLGFCLLLLSLIGSFYLYARSCSRLRLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQGLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGRELDIYAQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=877741 RIM63_RS00715 WP_249093266.1 126432..127466(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain HT321]
TTGATCAGCTTCTTGCAGAGGGACATCTCAATAGCAGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAAGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCAATCATACTTTTGGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATGCCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGCTTTTGTCTGCTTTTGCTGTCGCTGATTGGCTCTTTTTACCTATATGCCAGGTCCTG
TAGCAGGTTAAGGCTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGAGAATGGGGCAACCTCATCGGACAAGGCTTAGAATTGATCACCATTTTAGAAATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGGGCCTGCTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTGAGCCTAATGATTGAATATGGCGACATCAAATCAAAGCTTGGTCGGGAGCTAGATATCT
ATGCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTCAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	54.572	98.547	0.538
comYB	Streptococcus mutans UA159	54.572	98.547	0.538
comYB	Streptococcus gordonii str. Challis substr. CH1	52.647	98.837	0.52
comGB/cglB	Streptococcus mitis SK321	48.649	96.802	0.471
comGB/cglB	Streptococcus mitis NCTC 12261	48.503	97.093	0.471
comGB/cglB	Streptococcus pneumoniae Rx1	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae D39	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae R6	48.348	96.802	0.468
comGB/cglB	Streptococcus pneumoniae TIGR4	48.348	96.802	0.468
comGB	Lactococcus lactis subsp. cremoris KW2	46.313	98.547	0.456