Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RHS39_RS16125 Genome accession   NZ_CP133900
Coordinates   3448527..3449639 (-) Length   370 a.a.
NCBI ID   WP_024699624.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TW01     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3443527..3454639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHS39_RS16095 (RHS39_16095) hemF 3443988..3444905 (-) 918 WP_024699626.1 oxygen-dependent coproporphyrinogen oxidase -
  RHS39_RS16100 (RHS39_16100) - 3444953..3445510 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  RHS39_RS16105 (RHS39_16105) purE 3445710..3446195 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RHS39_RS16110 (RHS39_16110) - 3446200..3447327 (+) 1128 WP_025789540.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  RHS39_RS16115 (RHS39_16115) - 3447397..3447966 (-) 570 WP_025789539.1 type I DNA topoisomerase -
  RHS39_RS16120 (RHS39_16120) - 3448045..3448524 (-) 480 WP_005461440.1 DUF494 family protein -
  RHS39_RS16125 (RHS39_16125) dprA 3448527..3449639 (-) 1113 WP_024699624.1 DNA-processing protein DprA Machinery gene
  RHS39_RS16130 (RHS39_16130) - 3449623..3450717 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  RHS39_RS16135 (RHS39_16135) def 3450856..3451374 (+) 519 WP_005461416.1 peptide deformylase -
  RHS39_RS16140 (RHS39_16140) fmt 3451408..3452355 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  RHS39_RS16145 (RHS39_16145) rsmB 3452436..3453719 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39883.49 Da        Isoelectric Point: 6.4133

>NTDB_id=877449 RHS39_RS16125 WP_024699624.1 3448527..3449639(-) (dprA) [Vibrio parahaemolyticus strain TW01]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASAEKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=877449 RHS39_RS16125 WP_024699624.1 3448527..3449639(-) (dprA) [Vibrio parahaemolyticus strain TW01]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGAGAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CTCGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGAGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.453

100

0.478
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Legionella pneumophila strain ERS1305867

47.561

88.649

0.422
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376